Mycolicibacterium smegmatis MC2 155: LJ00_11745
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Entry
LJ00_11745 CDS
T03433
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msb
Mycolicibacterium smegmatis MC2 155
Pathway
msb03030
DNA replication
msb03410
Base excision repair
msb03420
Nucleotide excision repair
msb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LJ00_11745
03410 Base excision repair
LJ00_11745
03420 Nucleotide excision repair
LJ00_11745
03430 Mismatch repair
LJ00_11745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msb03032
]
LJ00_11745
03400 DNA repair and recombination proteins [BR:
msb03400
]
LJ00_11745
Enzymes [BR:
msb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LJ00_11745
DNA replication proteins [BR:
msb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LJ00_11745
DNA repair and recombination proteins [BR:
msb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LJ00_11745
NER (nucleotide excision repair)
GGR (global genome repair) factors
LJ00_11745
MMR (mismatch excision repair)
DNA ligase
LJ00_11745
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LJ00_11745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AIU07547
LinkDB
All DBs
Position
2443209..2445314
Genome browser
AA seq
701 aa
AA seq
DB search
MSEKATGEVEAELPEHPDADERRRWQELADEVREHQFRYYVKDAPIISDAEFDKLLRELQ
ALEDAHPELRTPDSPTQLVGGAGFATEFAPAEHLERMLSLDNVFDSDELTAWAARISSET
GDAAHFLCELKIDGVALSLVYRDGRLERGATRGDGRTGEDVTLNARTIDDIPERLTPSDE
FPVPAVLEVRGEVFFRVADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRKLR
MICHGIGYTEGFTPASLHDAYRALGAWGLPVSEHTTKVSTVAEVAERIAYWGEHRHDVEH
EIDGVVVKVDEVALQRRLGATSRAPRWAVAYKYPPEEATTKLLDIRVNVGRTGRVTPFAY
MEPVKVAGSTVGLATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGTEREF
EFPTHCPECGTELAPAKEGDADIRCPNSRSCPAQLRERLFHLAGRGAFDIEGLGYEAATA
LLAAQVIPDEGDLFTLTADDLLRTELFTTKKGELSANGKRLLANLTKAKEQPLWRVLVAL
SIRHVGPTAARALATEFGSLEAIEAASEEELAAVEGVGPTIAAAVKDWFTVDWHRAIVDK
WRAAGVRMADERDASIERTLEGLSIVVTGSLAGFSRDQAKEAIIARGGKAAGSVSKKTAY
VVAGDAPGSKYDKAVELGVPVLDEDGFRRLLEQGPPVEPAE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagaaggcaaccggagaagtcgaagcggaactgcccgaacatcctgacgccgac
gagcggcggcgctggcaggaacttgccgacgaggtgcgcgaacaccagttccggtactac
gtcaaggacgcgccgatcatctcggacgcggagttcgacaagctgctgcgcgaactgcag
gcgctcgaggacgctcatcctgagttgcggacgcccgattcacccacccagctggtgggc
ggcgccgggttcgccaccgagttcgcgcccgccgagcatctggaacggatgctgtcgctg
gacaacgtgttcgattccgacgagctgaccgcgtgggccgcccgcatcagcagcgagacc
ggcgacgcggcgcatttcctgtgcgagctcaagatcgacggtgtcgcgctgtcactggtg
taccgcgacggcaggctcgagcggggcgccacccgcggcgacgggcgcaccggcgaggac
gtcacgctcaacgcgcgcaccatcgacgacatccccgagcggttgacgccctccgacgag
ttcccggtgcccgccgtgctcgaagtgcgcggcgaggtcttcttccgtgtcgccgacttc
gaggagctcaacgcgggtctggtggccgagggcaagccgccgttcgccaatccccgcaac
agcgcggccggttcgctgcgccagaagaaccccgcggtcaccgcgcgccgcaagctgcgg
atgatctgtcacggcatcggatacaccgagggcttcaccccggcgtcgctgcacgacgcc
taccgcgcactcggggcgtggggcctaccggtgtccgagcacaccaccaaggtgtccacc
gtcgccgaggtcgccgaacgcatcgcctactggggcgagcaccgccacgacgtcgagcac
gaaatcgacggtgtggtggtcaaggtcgacgaggtcgcgttgcaacgccgcctcggggcg
acctcgcgcgcgccgcgctgggccgtggcctacaagtacccgcccgaggaggccaccacc
aagctgctcgacatccgggtcaacgtcggccgcaccggcagggtcacgccattcgcctac
atggaaccggtcaaggtggccgggtccaccgtgggcctggcgaccctgcacaacgcctcg
gaggtcaaacgcaagggcgtgctgatcggcgacaccgtggtgatccgcaaggctggcgac
gtcatccccgaggtgctggggcctgtcgtcgacctgcgcgacggcaccgagcgggagttc
gagttcccgacgcattgccccgagtgcggaaccgagttggccccggcgaaggagggcgac
gccgacatccgctgccccaactcgcgcagctgcccggcgcagctgcgggagcggctgttc
cacctcgccggtcgtggtgccttcgacatcgaggggctgggctacgaggcggccacggct
cttcttgccgcacaggtgatcccggatgagggggacctgttcaccctcaccgccgatgac
ctgctgcgcaccgaactgttcaccaccaagaagggtgagctctcggccaacggcaagcgt
ctgctggccaacctcaccaaggccaaggagcagccgctgtggcgggtgctcgtcgcgctg
tccatccggcatgtcgggcccaccgcggcgcgcgcactggccaccgagttcggcagcctg
gaggccatcgaggcggcgtcggaagaggagctggccgcggtcgagggcgtcggccccacc
atcgccgcggccgtcaaggactggttcaccgtcgactggcaccgtgcgatcgtcgacaag
tggcgcgcggccggggtgcgcatggccgacgaacgcgacgccagcatcgagcgcacgctc
gaaggactctcgatcgtggtgaccggatcgctggccggcttcagccgcgaccaggccaag
gaggcgatcatcgcgcgcggcggcaaggccgcgggttcggtgtcgaagaagaccgcctac
gtggtggccggcgacgcgccagggtccaagtacgacaaggcggtcgaactcggcgtgccg
gtcctcgacgaggacgggttccgccggctgctcgaacaggggccgccggtcgagccggcc
gagtag
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