Mesoterricola sediminis: METESE_32690
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Entry
METESE_32690 CDS
T09356
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msea
Mesoterricola sediminis
Pathway
msea03030
DNA replication
msea03410
Base excision repair
msea03420
Nucleotide excision repair
msea03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
METESE_32690 (ligA)
03410 Base excision repair
METESE_32690 (ligA)
03420 Nucleotide excision repair
METESE_32690 (ligA)
03430 Mismatch repair
METESE_32690 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msea03032
]
METESE_32690 (ligA)
03400 DNA repair and recombination proteins [BR:
msea03400
]
METESE_32690 (ligA)
Enzymes [BR:
msea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
METESE_32690 (ligA)
DNA replication proteins [BR:
msea03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
METESE_32690 (ligA)
DNA repair and recombination proteins [BR:
msea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
METESE_32690 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
METESE_32690 (ligA)
MMR (mismatch excision repair)
DNA ligase
METESE_32690 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
METESE_32690 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
BDU78311
UniProt:
A0AA48GS84
LinkDB
All DBs
Position
3875231..3877219
Genome browser
AA seq
662 aa
AA seq
DB search
MSADPKIRMQELAAQVLEHRRRYFVLDQPVLSDAEYDALERELRDLEAAHPEAADPNSPT
QRVGAPPLDQFRKARHATPMLSLDNTYSEDDLRDWEGRVIKGLGFSPVFSAELKVDGLSL
SLLYQDRTLVRAVTRGNGEEGEDVTENARTIADIPLTLPAAAPGTLEVRGEVFLSRRRWE
ELNRERDARGEARFANPRNAASGTMKQLDSRITAERRLSFLPWQMIGSAAHSSGMDQLAA
WGFTRMPAHGEGTFADVLAFIEAQREARLKLPFDTDGVVVKVDGLDFQERLGFTDRVPRW
AIAFKYPGLQATTTLLGVTWQVSRAGKLTPVAELEAVEVAGSTVRRATLHNADELLRLGV
RVGCKVFVEKGGEVIPKVVAVVPGTLPGDAPPPAVPQACPVCGGAVGKDSDEEVAWRCQN
PECPAKISARLQHLGSRVALDIEGLGEALVEQLAPRFAQPWDVFSLLEDPRNSLARLAGL
ERMGEKSAQNLMTALEAARRKPLARWIHALGIPMVGARTAELLAEAFPTLEDLWAAPEPK
LQAVEEVGPKVAAAIRAFAALHPGLPGQLAAMGVAPEAPAPRDRAGLPLAGQVAVVTGTL
PTLGREEAEALLKALGAKVTGSVSAKTTVLVAGEKAGSKLAKAEALGIPVRDEAWLRALK
PE
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgatcccaagatccgaatgcaggagctggcggcccaggtgctggagcaccgc
cgccgctacttcgtcctcgaccagcccgtcctctccgacgcggaatacgacgccctggag
cgcgagctgcgggacctggaggcggcccaccccgaggccgcggaccccaacagccccacc
cagcgggtgggcgcgccgcccctggaccagttccggaaggcccggcacgccacccccatg
ctgagcctcgacaacacctattccgaggacgacctgcgcgactgggagggccgggtcatc
aagggcctcggcttttcgcccgtcttttcggctgagctcaaggtggacgggctctccctg
tccctcctgtaccaggaccggaccctcgtccgcgccgtcacccgcggcaacggcgaggag
ggggaggacgtcaccgagaacgcccgcaccatcgccgacatccccctcaccctgccggcc
gcggcccccgggaccctggaggtgcgcggcgaggtgttcctgtccaggcggcggtgggag
gagctgaaccgcgagcgggacgcccgcggcgaggcccggttcgcgaatccgcgcaatgcc
gcctccggcaccatgaagcagctcgacagccgcatcacggcggagcgccgcctctccttc
ctcccctggcagatgatcggctcggccgcgcacagctcgggcatggaccagctcgccgcc
tggggtttcacgcgcatgcccgcccacggggagggcacgttcgcggacgtcctcgccttc
atcgaggcccagcgggaggcccggctgaagctgcccttcgacaccgacggggtcgtcgtc
aaggtggacggcctggacttccaggagcgcctgggcttcacggaccgggtgccccgctgg
gccatcgccttcaagtaccccggcctccaggccaccaccaccctcctgggcgtcacctgg
caggtgagccgggccgggaagctgaccccggtggccgagctggaggcggtggaggtggcg
ggatcgacggtgcgccgcgccaccctgcacaacgccgacgagctcctgcgcctcggcgtc
cgcgtgggctgcaaggtcttcgtggagaagggcggcgaggtcatccccaaggtggtggcc
gtggtcccgggcaccctgcccggggacgcgccgccccccgccgtgccccaggcctgtccc
gtctgcggcggggccgtggggaaggactccgacgaggaagtcgcctggcgctgccagaac
cccgagtgccccgccaagatcagcgcccgcctccagcacctgggctcccgggtggccctg
gacatcgagggcctgggcgaggccctcgtggagcagctggccccgcggttcgcccagccc
tgggacgtcttcagtctcctcgaggatccccgcaacagcctggcgaggctggccgggctg
gagcgcatgggcgagaagagcgcccagaacctcatgacggccctggaggcggcccgccgc
aagcccctggcccggtggatccacgccctgggcatccccatggtcggggcccgcaccgcg
gagctcctggccgaggccttccccaccctggaggacctgtgggccgccccggaaccgaag
ctccaggccgtggaggaggtgggtcccaaggtggccgccgccatccgggccttcgccgcc
ctccaccccggcctcccgggccagctcgccgcgatgggcgtcgcgcccgaggcccccgcc
ccccgggaccgcgccggcctgcccctggcgggccaggtggccgtggtcacgggcaccctg
cccaccctggggcgcgaggaggccgaggccctgctcaaggccctgggcgccaaggtgacc
ggatccgtcagcgccaagaccacggtgctggtggccggcgagaaggccggctccaagctg
gccaaggccgaggccctgggcatccccgtccgggacgaggcctggctccgcgccctgaaa
ccggaatga
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