Marinobacterium sediminicola: LN244_13700
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Entry
LN244_13700 CDS
T07998
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msec
Marinobacterium sediminicola
Pathway
msec03030
DNA replication
msec03410
Base excision repair
msec03420
Nucleotide excision repair
msec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LN244_13700 (ligA)
03410 Base excision repair
LN244_13700 (ligA)
03420 Nucleotide excision repair
LN244_13700 (ligA)
03430 Mismatch repair
LN244_13700 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msec03032
]
LN244_13700 (ligA)
03400 DNA repair and recombination proteins [BR:
msec03400
]
LN244_13700 (ligA)
Enzymes [BR:
msec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LN244_13700 (ligA)
DNA replication proteins [BR:
msec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LN244_13700 (ligA)
DNA repair and recombination proteins [BR:
msec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LN244_13700 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LN244_13700 (ligA)
MMR (mismatch excision repair)
DNA ligase
LN244_13700 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LN244_13700 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ULG68736
LinkDB
All DBs
Position
complement(2998862..3001225)
Genome browser
AA seq
787 aa
AA seq
DB search
MSLPESVSTRAEQLRAEIEQHNYRYYVLDLPSVPDSEYDRLFRELQQLESEYPELINADS
PTQRVGRKPDTGFAEVAHEQPMLSLDNAFSEEDMAAFVRRLLDRLGLAADDKLDFACEPK
LDGLAVSLMYEQGRLARAATRGDGYTGEDITLNVRTLKSVPLRLMGSGWPDRLEVRGEIY
MPRAGFEQLNEQARAADEKIFVNPRNAAAGSLRQLDPAITARRPLEFCCYSTGVVEGGEL
PQTHAARLKQLNAWGLKINSEMRVVQGLEGCLEYYHALASKRDQLAYDIDGIVFKVDRLD
LQAELGYVARAPRWAIAHKFPAQEEITRLKAVEFQVGRTGAITPVARLEPVFVGGVTVSN
ATLHNMDEIARLGVKAGDHVIVRRAGDVIPQIVQVVEDRRTGDETEVQIPRHCPICGSDV
ERTRLVKRGKGREQVSEGAIYRCVGRLSCRAQLTQALIHFVSRKAMDIDGLGEKSIEQLV
ERDLVKSPADLYRLQVSDFLTLEGFAQLSSENLFNSIAASRQVELARFIYALGIPEVGEG
TARALAGKLGNLQRLREAEPLLLTWLPDIGLEVAHEIHNFMQDDHNRQVIDDLLAQGIQL
QNEQGVAAELQGSISLEMLIERLDVPGVAKTGAQALAKYFKALEPMLAADESVLAEIPKL
SKKAREGLIGCLNQPHWVATARALETQLLAFGMHWSCEPESPAAASAQPLQGQTWVLTGT
LEQMTRDQAKERLLALGAKVSGSVSGKTHTVVAGPGAGSKLTKAEQLGVPVLDEAAFLVQ
LAEWESA
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcctgaatccgtatccactcgcgctgaacagctgcgcgccgagattgaacaa
cacaattaccgttattacgtactcgacctgccgagcgtgcccgacagtgagtatgaccgc
ctgttccgtgagctgcagcagctggaaagcgaataccccgagctgatcaatgccgattcg
ccgacccagcgggttggcaggaagccggataccggctttgccgaggtcgcacatgaacag
ccgatgttgtcactggataacgcgttcagtgaagaggacatggcggcattcgtccgccgc
cttctggatcgtctgggtctggccgcggacgataaactggattttgcctgtgaaccgaag
ctggacggtctggccgtgagcctgatgtacgaacaggggcggcttgcaagggcagcgaca
cgaggggacggttataccggtgaagacatcacgctcaacgtgcgaacgctgaaatccgtt
cccttgcgattgatggggtctggctggccggatcgactggaagtgcggggagagatttat
atgccccgcgctggtttcgagcaactgaacgaacaggccagagccgccgacgaaaagatc
ttcgtaaatccgcgcaatgccgctgccggcagcctgcgtcagctggatccggccatcacg
gccagacgtcctctggagttctgttgttacagtaccggtgttgtggagggaggcgagctg
ccgcaaacgcacgcggccaggttgaagcaattgaatgcctggggcctgaagatcaatagc
gagatgcgtgtggttcaggggctggagggctgtctggagtattatcatgcgctggcttcg
aaacgcgaccagttggcctatgacattgacgggatcgtgttcaaggtcgaccgtctcgat
ctgcaggcagaactggggtatgtggcacgggcgccacgttgggcgattgcacacaagttc
ccggctcaggaggagattacacggctgaaggccgttgagttccaggttgggcgtacaggc
gccatcacgccggtggcgcgcctggagccggtgtttgtgggtggtgttaccgtcagcaat
gccaccctgcacaatatggatgagatcgcgcgtctgggggtcaaggcaggggaccatgtg
atcgttcgccgtgccggtgacgtcatcccgcaaatcgtacaggtggtggaagacaggcga
acaggggacgaaaccgaggtacagattccacgccactgcccgatttgtggctctgatgtt
gagcgcacgcgtctggttaaacgtggcaaagggcgtgagcaggtcagcgagggcgcaatc
tatcggtgtgtgggacgcttgtcctgccgtgcccagctgactcaggcgctgatccatttt
gtgtcgcgcaaggcaatggatatcgatggcctgggcgagaagagtatcgaacagctggtc
gaacgtgatctggtcaagtcgccggccgatctctatcgcttgcaggtcagtgacttcctg
acgcttgagggctttgcccagttgtcctcggagaatttgttcaactccatagccgccagt
cgtcaggtcgagctggctcgttttatctatgcgctggggattcctgaggtgggtgagggg
actgccagagcactggcgggcaaactggggaacctgcaacggttgcgggaggccgaacct
ctgctgttgacctggttgcctgatatcggtctggaagtggcgcatgagatccataacttc
atgcaggatgatcacaatcgtcaagttattgacgatctgctggcgcagggtatccagctg
cagaacgagcagggcgttgctgccgaactgcagggcagcatcagtctggagatgttgatc
gaacgtctggacgtacccggtgtcgccaaaaccggtgctcaggcattggccaagtacttc
aaggccctcgaacccatgctggcagctgatgaatcagtgctggccgagattcccaaactg
agcaagaaagcccgagagggtctgatcggctgtctgaatcagcctcattgggtcgcaact
gcgcgtgcactcgagacacagttactggcgtttggcatgcactggagttgtgaaccggag
agtccggcagctgcatctgcacagcctcttcaggggcagacctgggtgctgacggggacg
ctggagcagatgacgcgcgatcaggccaaggagcgcctgctggcactgggtgccaaggtc
agcggcagtgtctccggcaagactcataccgtggtcgccggcccaggcgcaggctccaaa
ctgaccaaggccgagcagctcggcgtgccggtgctggatgaggccgcgttcctggtgcag
ttggcggagtgggaatcggcatga
DBGET
integrated database retrieval system
