Metabacillus sediminis: WCV65_02325
Help
Entry
WCV65_02325 CDS
T10864
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msee Metabacillus sediminis
Pathway
msee03030
DNA replication
msee03410
Base excision repair
msee03420
Nucleotide excision repair
msee03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WCV65_02325 (ligA)
03410 Base excision repair
WCV65_02325 (ligA)
03420 Nucleotide excision repair
WCV65_02325 (ligA)
03430 Mismatch repair
WCV65_02325 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msee03032
]
WCV65_02325 (ligA)
03400 DNA repair and recombination proteins [BR:
msee03400
]
WCV65_02325 (ligA)
Enzymes [BR:
msee01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WCV65_02325 (ligA)
DNA replication proteins [BR:
msee03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WCV65_02325 (ligA)
DNA repair and recombination proteins [BR:
msee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WCV65_02325 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WCV65_02325 (ligA)
MMR (mismatch excision repair)
DNA ligase
WCV65_02325 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WCV65_02325 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
AphA_like
BRCT_2
5_3_exonuc
Zn_ribbon_NUD
RNA_ligase
zf-IS66
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
WXB97359
UniProt:
A0ABZ2NHU2
LinkDB
All DBs
Position
412670..414679
Genome browser
AA seq
669 aa
AA seq
DB search
MTDFQSSQKRVQELHELLNRYNYEYHVLDKPSVPDAEYDQRLHELISLEEQFPELKTPDS
PSQRVGGAILEGFSKVEHKTPMLSLGNAFNDQDLRDFDRRVRQNAGDEVQYVVELKIDGL
AVSLRYENGVFVQGATRGDGSIGEDITENLRTIRSIPLRLRKSLSIEVRGEAFMPKKSFE
KLNEKKIELEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYGIGDLGETGVERQSEGL
DLLDELGFKTNLERKNCETIDEVIKILHTIQEQRNTLPYEIDGVVIKVDALSQQQQLGFT
AKSPRWAIAYKFPAEEVMTKLLDIELNVGRTGVITPTAILEPVRVAGTTVQRASLHNEDL
IREKDIRLGDYVIVKKAGDIIPEVVNVLADHRTGDEKEFAMPTECPECGSELVRIEGEVA
LRCINPMCPAQLREGLIHFVSRNAMNIDGLGERVIAQLFQEGLITDVADLYELSNDQLLA
LDRMGEKSTENLLNAILKSKENSLEKLLFGLGIRHVGSKAAKTLAQNFETMDRLMEAGRE
ELLAINEIGDKMADAVVTYFEKPEVAQLIEELKSHGVNMNYKGPKLVAPEEIDSYFAGKT
IVLTGKLEEMGRNEAKAEIEALGGKVTGSVSKSTDLLIAGEAAGSKLSKAQELSIEIWDE
ARMIEELKK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattttcaatcatcccagaagagagttcaggagctgcatgagcttttaaaccgc
tacaattatgaataccacgttctggacaaaccaagtgtaccagatgccgagtatgatcag
cgcctccatgagctgatcagtcttgaagaacagtttccagagctgaaaacgcctgattcc
ccttcccagcgtgttggcggagcgattttggaaggcttcagcaaggtcgagcataagacg
ccgatgctcagcctcggcaatgcattcaatgatcaggatttgcgggattttgaccgccgt
gtccgccaaaatgcaggagacgaggttcaatatgtcgtagagttaaagatcgatggcctc
gctgtatcgctccgttatgaaaacggagtgttcgtccaaggagcgacaagaggggatggc
tccatcggggaggatattaccgaaaatctccgtacgatccgctcaatcccgctccgcctg
agaaaatccttatccattgaggtaagaggcgaagcatttatgccgaaaaaatcgtttgaa
aagctaaacgagaaaaaaattgagctggaggaagagccgtttgcaaacccgcggaatgcg
gctgccggctctctccgccagctcgacccgaaaattgccgcgaaacgtaatctcgatatt
ttcgtctatggtattggagaccttggtgaaacaggagttgaaagacaaagtgaaggtctt
gatcttctggatgagcttggtttcaaaacgaaccttgaaagaaagaactgcgaaaccatt
gatgaagtcattaaaattttgcacaccattcaggagcagcgcaatacacttccatacgaa
attgacggagtcgttatcaaggtagatgcgctgagtcagcagcagcagcttggatttaca
gcgaaaagcccgcgctgggccattgcctataaattcccggcagaagaagtgatgacaaag
ctgcttgatattgaactgaacgtgggaagaaccggagtcattacacctacagccattctt
gaacctgtccgggtagcggggacgactgttcagcgcgcttccttgcacaatgaagacctg
atccgtgaaaaggatatccgtttaggtgattacgtcatcgtgaaaaaagcgggagatatt
attccagaggtcgtaaatgttctcgctgaccaccgaaccggtgacgaaaaagaattcgcg
atgccaaccgaatgtccggaatgcggcagtgaactcgtccgcatcgaaggggaagtggca
ttaagatgtattaatccgatgtgccctgcccagcttcgcgaaggtttgattcacttcgtt
tcaagaaacgccatgaacattgacggtcttggcgagcgcgtgattgcccagctttttcag
gaagggttaataaccgatgtggcagacctgtatgagctctcaaatgatcagctgcttgct
cttgaccggatgggtgagaaatcaacggagaatctattgaatgccattttaaaatcaaaa
gagaattctcttgaaaaacttctgttcggactcggaatccgccatgtaggctcaaaagct
gcaaaaacactggctcagaattttgaaacgatggaccgccttatggaagcaggccgtgaa
gaactgctcgctattaacgaaattggggacaaaatggccgatgccgtcgttacgtatttt
gaaaaaccggaagtggcccagctcatcgaagaactgaaaagccatggagtaaatatgaat
tataaagggccgaagcttgtcgcacctgaagaaatcgactcctactttgccggcaaaacc
attgtgctgaccggcaagcttgaggaaatgggccgaaatgaagcaaaggccgagattgaa
gcattgggcggaaaagtaacaggcagtgtcagcaaaagcacagatctcctgatagccggg
gaagcagcagggagcaagctgtcaaaagcacaagagctaagcattgaaatatgggatgaa
gcaagaatgatagaggaattaaagaaataa
DBGET
integrated database retrieval system
