Mycolicibacterium senegalense: K3U95_18430
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Entry
K3U95_18430 CDS
T07649
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msen
Mycolicibacterium senegalense
Pathway
msen03030
DNA replication
msen03410
Base excision repair
msen03420
Nucleotide excision repair
msen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K3U95_18430 (ligA)
03410 Base excision repair
K3U95_18430 (ligA)
03420 Nucleotide excision repair
K3U95_18430 (ligA)
03430 Mismatch repair
K3U95_18430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msen03032
]
K3U95_18430 (ligA)
03400 DNA repair and recombination proteins [BR:
msen03400
]
K3U95_18430 (ligA)
Enzymes [BR:
msen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K3U95_18430 (ligA)
DNA replication proteins [BR:
msen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K3U95_18430 (ligA)
DNA repair and recombination proteins [BR:
msen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K3U95_18430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K3U95_18430 (ligA)
MMR (mismatch excision repair)
DNA ligase
K3U95_18430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K3U95_18430 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QZA22702
LinkDB
All DBs
Position
complement(3905233..3907350)
Genome browser
AA seq
705 aa
AA seq
DB search
MSDEPTEAADAVLPEQPDADERRRWQELADEVRGHQFRYYVKDAPVISDAEFDLLLRQLQ
ALEAEYPELRTPDSPTQLVGGAGFATEFAPAEHLERMLSLDNVFDTDELSAWAARIKGEI
GDAAHYLCELKIDGVALALVYRQGRLVRAATRGDGRAGEDVTLNARTIDDIPEQLAHSDE
FPVPDVLEVRGEVFFRVADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRKLR
MICHGLGHIESAGGFPFTSLHDAYRALGQWGLPVSTHTAKVSGVAAVAERIAYWGEHRHD
VDHEIDGLVVKVDEVALQRRLGSTSRAPRWAVAYKYPPEEATTKLLDIRVSVGRTGRVTP
FAYMEPVKVAGSTVGLATLHNATEVQRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSE
RAFVMPTNCPECGTVLAPAKEGDADIRCPNTRSCPAQLRERVFHVAGRGAFDIEGLGYEA
ATALLQAGVIADEGDLFTLTADQLLRTDLFTTKAGELSANGKRLLANLDKAKAQPLWRVL
VALSIRHVGPTAARALATEFASLDAIVAAGEEQLAAVEGVGPTIAAAVVDWFTVDWHRAI
VDKWRAAGVRMADERDASIERTLEGLSIVVTGSLPGFSRDQAKEAIISRGGKAASSVSKK
TAYVVAGDAPGSKYDKAVELGIPILDEDGFRTLLAEGPQPTSDEG
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgatgagccgaccgaagctgccgacgccgtgctgcccgaacagcccgatgccgac
gagcggcgacggtggcaggaactcgccgatgaggtccgcggacaccagttccgctactac
gtcaaagacgcgccggtcatctccgacgccgagttcgacctgctcctgcggcagttacag
gccctcgaggccgagtaccccgagttgcggaccccggattctccgacgcaactggtcggc
ggtgccgggttcgccaccgagttcgccccggcagagcatctggaacggatgctgtctctg
gacaacgtgttcgacacggacgagctctcggcctgggcggcgcggatcaagggcgagatc
ggcgacgcggcgcactatctgtgcgaactgaagatcgacggagtggcactggcgctggtc
taccggcagggccggctggtccgggccgccacgcgtggtgacgggcgtgccggcgaagac
gtcacgctcaacgcccgcaccatcgacgacatcccggaacaactcgcgcattccgacgag
tttccggtgcccgacgtgttggaagtgcgcggcgaggtgttcttccgggtcgccgatttc
gaggagctcaacgccggtctggtcgccgagggcaagccgccgttcgccaatcctcgcaac
agcgcggcgggctcgctgcggcagaagaacccggcggtcaccgcgcggcgcaaacttcgg
atgatctgccacgggctggggcatatcgaaagtgccgggggttttccgttcacctctctg
cacgacgcctaccgggccctcggtcagtggggcctgccggtatccacccataccgcaaag
gtttccggggtggccgccgttgccgagcggatcgcctattggggcgaacaccgccacgac
gtcgaccacgagatcgacggcctggtggtcaaggtggacgaagtcgcgctgcagcgtcgg
ctcggttcgacctcgcgcgcgccccggtgggccgtcgcctacaaatatccgccggaagag
gccaccaccaagctgctcgacatccgggtgagcgtgggccggaccggcagggtcacgccg
ttcgcttacatggagccggtcaaggtggccggatcgaccgtcggactggccacgctgcac
aacgcgacagaggttcagcgcaaaggggtgctgatcggcgacaccgtggtgatccgcaag
gccggcgacgtcattcccgaggtgctcggcccagtggtcgacctgcgcgacggatccgag
cgtgccttcgtcatgccgaccaactgccccgaatgcggcaccgtgctggcccccgccaag
gaaggcgacgccgacatccgctgcccgaacacccgcagttgcccagcgcagttgcgggag
agggtgtttcacgtcgcgggccgtggcgcattcgacatcgaggggctcggctacgaagcg
gccaccgctctgctgcaggccggggtgatcgccgacgagggcgacctgttcacgctgacc
gctgatcagttgctccgcaccgacctgttcaccaccaaggccggcgaattgtcggccaac
ggcaagcgcttgctggccaatttggacaaggccaaggcccagccgctgtggcgggtgctg
gtcgccctgtcgatccgccacgtcggtcccaccgcggcgcgggccctggccaccgagttc
gccagtctggatgccatcgtcgccgccggagaagagcagctggccgcggtggaaggggtg
ggccccacgatcgcagccgcggtcgtggactggttcaccgtcgactggcaccgcgcgatc
gtcgacaagtggcgcgccgccggtgtccggatggccgacgagcgcgacgccagcatcgag
cgcaccctggaaggcctgtcgatcgtggtaaccggctcgttgcccggattctcccgcgat
caggccaaggaggccatcatcagccgcggcggcaaggccgccagttcggtgtcgaagaag
accgcgtacgtggtggccggggatgcgcccggctccaagtacgacaaggccgtcgaactg
gggatcccgatcctcgacgaggacggcttccggacgttgttggccgaaggcccgcaaccg
acgtccgacgaggggtag
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