Mycobacterium seoulense: MSEO_03720
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Entry
MSEO_03720 CDS
T07134
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mseo
Mycobacterium seoulense
Pathway
mseo03030
DNA replication
mseo03410
Base excision repair
mseo03420
Nucleotide excision repair
mseo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mseo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSEO_03720 (ligA)
03410 Base excision repair
MSEO_03720 (ligA)
03420 Nucleotide excision repair
MSEO_03720 (ligA)
03430 Mismatch repair
MSEO_03720 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mseo03032
]
MSEO_03720 (ligA)
03400 DNA repair and recombination proteins [BR:
mseo03400
]
MSEO_03720 (ligA)
Enzymes [BR:
mseo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MSEO_03720 (ligA)
DNA replication proteins [BR:
mseo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MSEO_03720 (ligA)
DNA repair and recombination proteins [BR:
mseo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MSEO_03720 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSEO_03720 (ligA)
MMR (mismatch excision repair)
DNA ligase
MSEO_03720 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MSEO_03720 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BBX99872
UniProt:
A0A7I7NTD7
LinkDB
All DBs
Position
371009..373066
Genome browser
AA seq
685 aa
AA seq
DB search
MSPAVRRQWQDLADEVREHQFRYYIKDAPIVSDAEFDTMFNELLALEDRYPELRVPDSPT
QLVGGAGFATDFTEAEHLERMLSLDDVFDRDELVAWSNRVEAEVGGDPHYLCELKIDGVA
LSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLTASADLPIPAVLEVRGEVFFM
LADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGRTDGFAPKT
LHEAYTALKAWGLPVAEQTARVRGLAAVEDRIGYWGEHRYEIDHEIDGVVVKVDDFTLQR
RLGTTSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVRVAGSTVGLATL
HNASEVKRKGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGSEREFVMPTTCPECGTPLAPA
KEGDADIRCPNARSCPAQLRERVFHVAGRGAFDIEGLGYEAAIALLKAGVIADEGDLFTL
TEDDLLRTDLFRTKAGTLSANGRRLLDNLDKAKAVALWRVLVALSIRHVGPTAARALATE
FGSLDAIMAASTERLAAVEGVGPTIAAALTEWFTVDWHRAIVDKWRAAGVRLADERDASV
PRTLEGLTVVVTGSLTGFSRDDAKEAIIARGGKAAGSVSKKTDYVVAGDAPGSKYDKAIE
LGVPVLDEDGFRKLLAEGPPEAPAG
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgcccgcggtgcggcggcagtggcaggacctggccgacgaagttcgtgaacaccag
ttccgctactacatcaaggacgcgccgatcgtctccgacgccgaattcgacaccatgttc
aacgagctgctcgcactcgaggatcggtatccggagttgcgcgtccccgattccccgacc
cagctggtcggtggcgccggctttgccaccgacttcaccgaggctgaacacctcgagcgg
atgctgagcctcgacgacgtcttcgaccgcgacgagctggtcgcctggagcaaccgcgtc
gaggccgaggtcggcggcgatccccactacctgtgtgaactcaagatcgacggggtggcg
ctgtcgctggtgtaccgcgacggccggctggagcgcgccgccacccgaggcgatggccgg
gtcggcgaggacgtcacgctcaacgcgcgcaccatcgacgatgtgcccgagcggctcact
gcgagtgcggatttgccgattcccgccgtgctcgaggtgcgtggtgaggtcttcttcatg
ctcgccgatttcgaggcgctcaacgccagcctggtcgaggacggcaaggcgcccttcgcc
aatccgcgtaacagcgcggccggttcgctgcggcagaagaacccggcggtcaccgcgcgg
cgcaagctgcggatgatctgccacggcatcggccgcaccgacgggttcgcgcccaagacc
ctgcacgaggcctacacggcgctcaaggcctgggggttgccggtggccgagcagacggcg
cgcgtgcggggccttgccgcggtggaggaccggatcgggtactggggtgagcaccgctac
gagatcgaccacgaaatcgacggcgtggtggtcaaagtcgacgacttcacgctgcagcgc
cggctggggacgacgtcgagggcgccgcggtgggcggtcgcctacaagtatccgccccag
gaggcgcagaccaagctgctcgacatccgtgtcaacgtcgggcgcaccgggcgcgtcacg
ccgttcgccttcatgacgcccgtgagggtggccggatcgaccgtcgggctggccaccctg
cacaacgccagcgaggtcaagcgcaagggggtgctgatcggcgacacggtgatgatccgc
aaagccggtgacgtcatcccggaggtgctcggtcccgtcgtcgacctgagggacggttcc
gaacgcgaattcgtcatgcccacaacgtgtcccgagtgcggcaccccgctggcacccgcc
aaggagggcgacgccgacatccggtgtcccaacgcgcggtcctgcccggcgcagctgcgc
gagcgggtcttccacgtcgccggtcgcggggctttcgacatcgaggggctgggttatgag
gcggccatcgcgctgctgaaggccggggtgatcgccgacgagggtgatctgttcaccctc
accgaggacgacctgttgcgtaccgacctcttccggaccaaggccggcacgctgtccgcc
aacggcaggcggctgctcgacaacctggacaaggccaaggcggtggcgctgtggcgcgtg
ctggtggcgctgtcgatccggcatgtcggaccgacggcggcgcgcgccctggccaccgaa
ttcggcagcctggacgcgatcatggcggcctccaccgagcggctggccgcggtcgagggc
gtcggaccgaccatcgccgccgcgctcaccgagtggttcacggtcgactggcaccgtgcg
atcgtcgacaagtggcgggccgccggggtgcggctggccgacgaacgcgacgccagcgtg
ccccgcaccctcgaagggctgacggttgtcgtcaccggttcgctgaccggtttttcgcgc
gacgacgccaaggaggcgatcatcgcccgcggcgggaaggccgcgggttcggtgtcgaag
aagaccgactacgtcgtcgccggtgacgcgccgggttccaagtacgacaaggcgattgaa
ctcggcgtgccggtcctcgacgaggatggtttccggaagctgttggccgagggtccgccg
gaagctccggcgggctag
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integrated database retrieval system
