KEGG   Mergibacter septicus: CEP49_06910
Entry
CEP49_06910       CDS       T08622                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
msep  Mergibacter septicus
Pathway
msep03030  DNA replication
msep03410  Base excision repair
msep03420  Nucleotide excision repair
msep03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:msep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CEP49_06910
   03410 Base excision repair
    CEP49_06910
   03420 Nucleotide excision repair
    CEP49_06910
   03430 Mismatch repair
    CEP49_06910
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:msep03032]
    CEP49_06910
   03400 DNA repair and recombination proteins [BR:msep03400]
    CEP49_06910
Enzymes [BR:msep01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CEP49_06910
DNA replication proteins [BR:msep03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CEP49_06910
DNA repair and recombination proteins [BR:msep03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CEP49_06910
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CEP49_06910
   MMR (mismatch excision repair)
    DNA ligase
     CEP49_06910
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CEP49_06910
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD HHH PTCB-BRCT 5_3_exonuc DNA_pol_lambd_f DZR_2 BRCT_2
Other DBs
NCBI-ProteinID: AWX14649
LinkDB
Position
complement(1511355..1513379)
AA seq 674 aa
MTTKIKQLREELRYHEYQYHVLDQPQIPDAEYDRLFQQLKTLEQQYPEFITPDSPTQRVG
AKPENGFAQIQHEIPMLSLDNAFSDDDFVAFVKRMQDRLPLQMGDTEQLEFCCEPKLDGL
AVSLLYINGSLVQGATRGDGTTGEDITSNIRTIRNVPLQLLTDNSPARLEVRGEVFMPQA
GFDHLNQQALKNGEKTFANPRNAAAGSLRQLDPKITRQRPLVFNAYGIGIAEGVELPKTH
YKRLQWLKSIGIPVNSEIQCCKGIQSVLNYYKTIQEKRPTLGYDIDGTVLKINSINLQDE
LGFISKAPRWAIAYKFPAQEEMTVLNNVEFQVGRTGAITPVAKLEPVFISGVTVSNATLH
NADEIERLGIAIGDTVIIRRAGDVIPQIIGVVQSRRLANAQPIIFPENCPVCGSHIVRVK
GEAVARCTGGLVCEAQRKEGLKHFVSRKAMDIDGVGEKLIEQLVDREYLHTPADLFLLTK
EILIGLDRMGAKSAENALASLEKAKKTTLARFIFALGIRDVGEATAQNLANHFKTLEAIQ
QADIEQLQQVPDIGEVVANRVHHFWQEEHNRQVVEKLLEVGIHWDPPTLTEQNISDNPLK
NKTVVLTGTLTQMGRDQAKTLLQQLGCKVTGSVSKKTDYLIAGENAGSKLTKAEELSIKI
LSEDQFLTITKTYL
NT seq 2025 nt   +upstreamnt  +downstreamnt
ataacaactaaaattaaacaattaagagaagaattgcgttatcacgaatatcaataccac
gttttagatcaaccacaaattcccgatgctgaatatgatcgcctctttcaacaattaaaa
acattagaacaacaatacccagaattcattacgccagattcgccgacgcaacgggtggga
gctaaacctgagaatggctttgcccaaatacagcacgaaattccaatgctatctctggat
aatgctttttctgatgatgattttgttgcttttgttaaacgtatgcaagaccgcttacca
ctgcaaatgggtgataccgagcaactagaattttgctgtgaaccgaaacttgatggctta
gctgttagccttttgtatatcaatggaagtttagtgcaaggtgcaacccgtggtgatggt
acaactggcgaagatattactagcaatattcgtactatccgcaatgttccactccaatta
ttaactgataattctcctgcacgcttggaagtgcggggtgaagtttttatgccacaagca
ggctttgatcacctcaaccaacaagccttaaaaaatggtgaaaaaacctttgctaatcca
cggaatgctgccgcaggttcattacgtcaactagatccgaaaatcactcgccaacgtcca
ttggtatttaatgcttatggaatagggatcgctgaaggggttgaactgccaaaaacacac
tataaacgcttacaatggttaaaaagcattggtattccagtgaatagtgaaattcaatgt
tgtaaaggcatacaaagtgttctgaattattataaaactatccaagaaaaacgccctact
cttggctatgatattgatggtactgtacttaaaattaacagcattaacttgcaagatgaa
cttggctttatatccaaagcacctcgttgggctatcgcctataaatttccagcacaagaa
gaaatgactgttttaaataacgttgaattccaagttggacgaactggtgccatcaccccc
gtagctaaactagaacctgtttttattagtggcgtaactgttagcaatgcaacattacat
aatgctgatgaaattgaacgtttaggcattgcgattggggataccgtcattattcgccgt
gcaggtgatgttattccacaaataatcggtgtcgtgcaaagtcgccgccttgctaatgca
caacctattattttcccagaaaactgccctgtttgcggctcacatattgtcagagttaag
ggtgaagccgtcgcacgttgtactggtggattagtctgtgaagcacaacgaaaagaagga
ttaaaacattttgtttctcgtaaagcgatggatattgatggagtaggcgaaaaactcatt
gagcaattagtcgatcgtgaatacctacacactccagcagatctctttttattaactaaa
gagatcttaatcggtttagatcgtatgggtgcaaaatcagctgaaaatgcgttagcaagt
ctcgaaaaagcgaaaaaaacgactttagctcgctttatctttgccttaggtatccgagat
gttggcgaagcaaccgcacaaaatttagcaaatcacttcaaaacgctagaagcaattcaa
caagcagatattgagcaactacaacaagtccctgatattggtgaagtagttgctaaccga
gtacatcacttttggcaagaagagcataaccgacaagtggtggaaaaattgttagaagtc
ggtattcactgggatcctccaacactcacagagcaaaatattagcgataacccactgaaa
aataaaaccgttgttttaactggtacactaacacaaatggggcgtgatcaagcaaaaacc
ttactacagcaattaggatgtaaagttactggtagcgtatcgaaaaaaacggattatctg
attgctggtgaaaatgcgggatcaaaactgactaaagcggaagaacttagtattaaaata
ctgagtgaagatcagtttttaaccataaccaaaacatatctataa

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