Mergibacter septicus: CEP49_06910
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Entry
CEP49_06910 CDS
T08622
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msep
Mergibacter septicus
Pathway
msep03030
DNA replication
msep03410
Base excision repair
msep03420
Nucleotide excision repair
msep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CEP49_06910
03410 Base excision repair
CEP49_06910
03420 Nucleotide excision repair
CEP49_06910
03430 Mismatch repair
CEP49_06910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msep03032
]
CEP49_06910
03400 DNA repair and recombination proteins [BR:
msep03400
]
CEP49_06910
Enzymes [BR:
msep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CEP49_06910
DNA replication proteins [BR:
msep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CEP49_06910
DNA repair and recombination proteins [BR:
msep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CEP49_06910
NER (nucleotide excision repair)
GGR (global genome repair) factors
CEP49_06910
MMR (mismatch excision repair)
DNA ligase
CEP49_06910
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CEP49_06910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
DNA_pol_lambd_f
DZR_2
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AWX14649
LinkDB
All DBs
Position
complement(1511355..1513379)
Genome browser
AA seq
674 aa
AA seq
DB search
MTTKIKQLREELRYHEYQYHVLDQPQIPDAEYDRLFQQLKTLEQQYPEFITPDSPTQRVG
AKPENGFAQIQHEIPMLSLDNAFSDDDFVAFVKRMQDRLPLQMGDTEQLEFCCEPKLDGL
AVSLLYINGSLVQGATRGDGTTGEDITSNIRTIRNVPLQLLTDNSPARLEVRGEVFMPQA
GFDHLNQQALKNGEKTFANPRNAAAGSLRQLDPKITRQRPLVFNAYGIGIAEGVELPKTH
YKRLQWLKSIGIPVNSEIQCCKGIQSVLNYYKTIQEKRPTLGYDIDGTVLKINSINLQDE
LGFISKAPRWAIAYKFPAQEEMTVLNNVEFQVGRTGAITPVAKLEPVFISGVTVSNATLH
NADEIERLGIAIGDTVIIRRAGDVIPQIIGVVQSRRLANAQPIIFPENCPVCGSHIVRVK
GEAVARCTGGLVCEAQRKEGLKHFVSRKAMDIDGVGEKLIEQLVDREYLHTPADLFLLTK
EILIGLDRMGAKSAENALASLEKAKKTTLARFIFALGIRDVGEATAQNLANHFKTLEAIQ
QADIEQLQQVPDIGEVVANRVHHFWQEEHNRQVVEKLLEVGIHWDPPTLTEQNISDNPLK
NKTVVLTGTLTQMGRDQAKTLLQQLGCKVTGSVSKKTDYLIAGENAGSKLTKAEELSIKI
LSEDQFLTITKTYL
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
ataacaactaaaattaaacaattaagagaagaattgcgttatcacgaatatcaataccac
gttttagatcaaccacaaattcccgatgctgaatatgatcgcctctttcaacaattaaaa
acattagaacaacaatacccagaattcattacgccagattcgccgacgcaacgggtggga
gctaaacctgagaatggctttgcccaaatacagcacgaaattccaatgctatctctggat
aatgctttttctgatgatgattttgttgcttttgttaaacgtatgcaagaccgcttacca
ctgcaaatgggtgataccgagcaactagaattttgctgtgaaccgaaacttgatggctta
gctgttagccttttgtatatcaatggaagtttagtgcaaggtgcaacccgtggtgatggt
acaactggcgaagatattactagcaatattcgtactatccgcaatgttccactccaatta
ttaactgataattctcctgcacgcttggaagtgcggggtgaagtttttatgccacaagca
ggctttgatcacctcaaccaacaagccttaaaaaatggtgaaaaaacctttgctaatcca
cggaatgctgccgcaggttcattacgtcaactagatccgaaaatcactcgccaacgtcca
ttggtatttaatgcttatggaatagggatcgctgaaggggttgaactgccaaaaacacac
tataaacgcttacaatggttaaaaagcattggtattccagtgaatagtgaaattcaatgt
tgtaaaggcatacaaagtgttctgaattattataaaactatccaagaaaaacgccctact
cttggctatgatattgatggtactgtacttaaaattaacagcattaacttgcaagatgaa
cttggctttatatccaaagcacctcgttgggctatcgcctataaatttccagcacaagaa
gaaatgactgttttaaataacgttgaattccaagttggacgaactggtgccatcaccccc
gtagctaaactagaacctgtttttattagtggcgtaactgttagcaatgcaacattacat
aatgctgatgaaattgaacgtttaggcattgcgattggggataccgtcattattcgccgt
gcaggtgatgttattccacaaataatcggtgtcgtgcaaagtcgccgccttgctaatgca
caacctattattttcccagaaaactgccctgtttgcggctcacatattgtcagagttaag
ggtgaagccgtcgcacgttgtactggtggattagtctgtgaagcacaacgaaaagaagga
ttaaaacattttgtttctcgtaaagcgatggatattgatggagtaggcgaaaaactcatt
gagcaattagtcgatcgtgaatacctacacactccagcagatctctttttattaactaaa
gagatcttaatcggtttagatcgtatgggtgcaaaatcagctgaaaatgcgttagcaagt
ctcgaaaaagcgaaaaaaacgactttagctcgctttatctttgccttaggtatccgagat
gttggcgaagcaaccgcacaaaatttagcaaatcacttcaaaacgctagaagcaattcaa
caagcagatattgagcaactacaacaagtccctgatattggtgaagtagttgctaaccga
gtacatcacttttggcaagaagagcataaccgacaagtggtggaaaaattgttagaagtc
ggtattcactgggatcctccaacactcacagagcaaaatattagcgataacccactgaaa
aataaaaccgttgttttaactggtacactaacacaaatggggcgtgatcaagcaaaaacc
ttactacagcaattaggatgtaaagttactggtagcgtatcgaaaaaaacggattatctg
attgctggtgaaaatgcgggatcaaaactgactaaagcggaagaacttagtattaaaata
ctgagtgaagatcagtttttaaccataaccaaaacatatctataa
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