Mycoplasma seminis: Q8852_04280
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Entry
Q8852_04280 CDS
T09354
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mses
Mycoplasma seminis
Pathway
mses03030
DNA replication
mses03410
Base excision repair
mses03420
Nucleotide excision repair
mses03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mses00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q8852_04280 (ligA)
03410 Base excision repair
Q8852_04280 (ligA)
03420 Nucleotide excision repair
Q8852_04280 (ligA)
03430 Mismatch repair
Q8852_04280 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mses03032
]
Q8852_04280 (ligA)
03400 DNA repair and recombination proteins [BR:
mses03400
]
Q8852_04280 (ligA)
Enzymes [BR:
mses01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q8852_04280 (ligA)
DNA replication proteins [BR:
mses03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q8852_04280 (ligA)
DNA repair and recombination proteins [BR:
mses03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q8852_04280 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q8852_04280 (ligA)
MMR (mismatch excision repair)
DNA ligase
Q8852_04280 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q8852_04280 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
zinc-ribbons_6
HHH_5
Motif
Other DBs
NCBI-ProteinID:
WLP85507
UniProt:
A0AA49XBJ6
LinkDB
All DBs
Position
complement(999132..1001261)
Genome browser
AA seq
709 aa
AA seq
DB search
MKQNTQNNEKISSKEQAKARIIYLTNYLNELNNAYYNLDNPQVEDYIYDQLLRELEELEI
KYKDLIQPDSPTKKIGGVPRIDFPKYRHQKPMLSLAKAYSFEEIAKFVSDIKSELPSYDT
DFNLEPKIDGLSISLIYKQGKLIRAVTRGDGKEGEDVTKNAILIKGIAKSIPYQKDIEIR
GEIYVSKQTLLETNAKLNEEYETKADEYINIKLPEYQAKITSGKKATHPVEPKLVQFANT
RNMAAGTLRQKNSKLLLERELQVIMYDIVNPLDHNIYHQNKVLSFIKELGLPTHDVSYVE
KDLDAITSRISEFESLKDSFQYDCDGFVIKLNELEYWDKLGKTAKFPRYAIAYKYKTEEA
YPIVSKIITTVGRTGKITYVAEFDQAVELNQTKVQRATLHNYDFITNLSLNLGDRVVVIK
SGEIIPKIIDLKEKLVAGVFPKVLTCPECGSQLVELEGIVDQFCENDDCESKKIKKLIHF
VSRNALNIISLGEKLVEELYLKGFVSDFASIFDLDLHREEIMSQVTNFKELRMNNLRDSL
IKSSNVELYRVIFGLGIKNIGLEVAKLIANNISNLEELISYPLENLLLINTIGPEIVESL
REFISKEENRNELIKLDSKLTYIKDESVKTNLLEGLNFVVTGTLSIPRDDMWKLIEQNGG
IAQKSVNKKTNYLLAGDNVGASKTQKAQDLGVKVISEVEFYQLLESKVA
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaacacacaaaataatgaaaaaatctcaagcaaagagcaagctaaagctaga
ataatatacttaactaattatttaaatgaactaaataatgcttactataatttggataat
cctcaagttgaagactatatttatgatcaattacttagagaacttgaagagttagaaatt
aagtataaagatttaattcaacctgattctccaactaaaaaaataggaggagtaccacgg
attgattttcctaaatacagacaccaaaaaccaatgttatctttagcgaaagcttatagt
tttgaagaaattgcaaaatttgtctctgatattaaatcggaacttcctagttatgatact
gattttaatcttgaacctaaaattgatggtttatcaatttcattaatttataagcaaggt
aaattaattcgtgctgtaactagaggggatggaaaagaaggagaagatgttactaagaat
gctattttgattaaaggaatagctaaaagcataccttaccaaaaagatattgaaatcaga
ggtgaaatttatgtttcaaaacaaactttgcttgaaacaaatgcaaaattaaatgaagaa
tatgaaacaaaagctgatgaatatattaatattaaacttccagaatatcaagctaaaata
actagcggtaaaaaagcaactcaccctgttgaacctaaattagtgcaatttgctaatact
agaaatatggctgcaggtacattaagacaaaagaattctaaattattgcttgaacgtgaa
ttgcaagttattatgtacgacattgttaatccactggatcacaacatttatcatcaaaat
aaagtgttaagtttcattaaagagttaggacttccaacccatgatgtttcttatgtagaa
aaagatttagatgctattacaagtagaattagtgaatttgaaagtttaaaagattccttc
caatatgactgtgatggtttcgttattaaacttaatgaacttgaatactgagataagctt
ggaaaaacagcaaaattccctcgttatgcaattgcttataagtataaaactgaagaagcc
tatcctatagtttcaaaaataattactacagttggaagaactggaaaaattacttatgtt
gctgaatttgatcaagccgtagaattaaaccaaactaaagttcaaagagcaacattacac
aattatgactttattacaaatttatctttaaacctaggagatagggttgtagtaataaaa
tcaggtgaaattattcctaaaattattgatttaaaagaaaaattagttgctggagtattt
ccaaaagttttaacttgtccagaatgtggttcacaattagtagaactcgaaggaattgtg
gatcaattttgcgaaaatgatgattgtgaatctaagaaaattaagaaattaattcacttt
gtttctagaaatgctttaaatattatttcgctaggtgaaaaacttgttgaagaactttat
ttaaaaggatttgtaagtgatttcgcgtcaatttttgatttggatttacatagagaagaa
ataatgtctcaagttactaatttcaaagagcttagaatgaataaccttagagatagtttg
attaaaagttctaatgtagaactctacagagttatttttggtctcggaatcaagaacata
ggcttagaagttgcgaaattaattgcaaataatatttctaatttagaggaactaatttct
tatccactagaaaatttacttttaatcaatactataggacctgaaatcgtggaatctctt
cgtgaatttatttctaaagaagaaaatagaaatgaattaattaaacttgattctaaatta
acttatatcaaagatgaaagcgttaaaacaaacttactggaagggcttaatttcgttgta
actggaacattatcaattcctagagatgatatgtgaaaacttattgaacaaaatggtgga
attgcacaaaaaagcgtaaataagaaaactaattatttacttgctggggataatgttgga
gcaagcaaaactcaaaaagcccaagatttaggtgtaaaagtcatttctgaagttgaattt
tatcaactgcttgaatctaaagtggcttaa
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