Microbacterium schleiferi: IT882_08970
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Entry
IT882_08970 CDS
T07058
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msf
Microbacterium schleiferi
Pathway
msf03030
DNA replication
msf03410
Base excision repair
msf03420
Nucleotide excision repair
msf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IT882_08970 (ligA)
03410 Base excision repair
IT882_08970 (ligA)
03420 Nucleotide excision repair
IT882_08970 (ligA)
03430 Mismatch repair
IT882_08970 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msf03032
]
IT882_08970 (ligA)
03400 DNA repair and recombination proteins [BR:
msf03400
]
IT882_08970 (ligA)
Enzymes [BR:
msf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IT882_08970 (ligA)
DNA replication proteins [BR:
msf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IT882_08970 (ligA)
DNA repair and recombination proteins [BR:
msf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IT882_08970 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IT882_08970 (ligA)
MMR (mismatch excision repair)
DNA ligase
IT882_08970 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IT882_08970 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
HHH
Nlig-Ia
PTCB-BRCT
HHH_3
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QPE06022
UniProt:
A0A7S8RIR3
LinkDB
All DBs
Position
complement(1871597..1873888)
Genome browser
AA seq
763 aa
AA seq
DB search
MTSDDAELARLGLDDARAEASRLTDLIVDARDAYYGRDEVIVDDATYDGWMHRLEVLERL
HPEVQGQDSPTLSVGAASGTLFAPVEHAERMLSLDNVFSEEEFRAWAARVQRDVGAPVHY
LCELKIDGLALSLRYERGRLVSAATRGDGRVGEDVTENVRDVAGIPVALGGAGHPELVEV
RGEVFFTVADFESLNAYQESVGDRLFANPRNAASGSLRQKREGKNERQLAAMHERLSRLR
LTVHGIGAWPNPPVAAQSAVYDLLASWGLPVSRYFTVAESVDGAADYIRHYGEHRHDVEH
EIDGVVVKVDELALHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVSVGRTGRATPFAV
MEPARVAGSVVRQATLHNQDVVKAKGVLIGDTIVIRKAGDVIPEVLGPVVELRDGSERAF
VMPTHCPECGSPLAPAKEGDIDLRCPNTRSCPAQVRGRVEHIGSRGALDIEGLGEVSAAA
LTHPLRPEVPPLVTEAGLFDLRAEDLFPIDVEVRDAETGLVRLDANGAPDARSPFRRQRK
APLDGRAPTASRPDPAFDPDGPFDGDADFILSAAAYELLENVERAKTKELWRFLVALSIR
HVGPVAARALAQWFGSIDAIRSASREELAAVEGVGPIIADAIIDWFEVDWHVEIVERWVA
AGAQLATPGHPGPGAAVVDGGVLEGVTVVATGTLEGYTREGAQEAIIAAGGKAASSVSKK
TDFVAAGPGAGSKLAKAEELGVRVIDAAQFRILVEQGPEALGE
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
gtgacgagcgacgacgcggagctggcgcggctcggcctggatgatgcccgtgctgaggct
tcccgcctgaccgacctcatcgtggatgcccgagacgcgtactacgggcgcgatgaggtc
atcgtcgacgatgccacctacgacggctggatgcaccggctcgaggtgctcgagcggctg
caccccgaggttcagggccaggattcaccgaccctgtccgtcggtgcggcatccggcacc
ctgttcgcgcccgtcgagcacgccgaacggatgctgagcctcgacaacgtcttcagcgaa
gaggagttccgcgcctgggcggcgcgcgtgcagcgcgatgtcggcgcacccgtgcactac
ttgtgcgagctgaagatcgacgggctggcgctttcgttgcgctacgagcgcgggagactc
gtgtcggcagccacgcgcggcgacggccgtgtcggcgaggatgtcaccgagaatgttcgc
gatgtcgccggaatcccggtggcgcttggcggggcggggcatccggagctcgtcgaggtg
cgcggcgaggtgttcttcactgtcgctgacttcgagtctctgaacgcgtatcaggagtcg
gtgggcgaccggctgttcgcgaatccacggaatgcggcatccgggtcgctccggcaaaag
cgtgagggcaagaacgagcgacagctcgctgcgatgcatgagcggctctcgcgcctgcgc
ctgacggtgcacggtatcggtgcgtggcccaacccgccggtggcggcgcagagcgcggtg
tatgacctgctcgcgtcctgggggctgccggtgagccggtacttcacggtcgctgagtct
gtggacggcgccgccgactacatccgtcactacggcgagcaccgccatgacgtcgagcac
gagatcgatggcgtcgtcgtgaaggtcgacgagctggcacttcacgatgagctgggggcc
acgagtcgcgcgccacggtgggcgatcgcctataagtacccgcccgagcaggtcaacacg
aagctccttgacatcgtcgtatcggtcgggcgcaccggtcgcgcgacgccattcgcggtc
atggaaccagcgcgcgtcgccggcagcgtcgtgcggcaggcgactctgcacaatcaggac
gtcgtgaaagccaagggtgtcctgatcggtgacacgatcgtcattcgcaaggccggggac
gtgattcccgaggttctcgggcccgtggtcgagctgcgtgacggaagcgagcgtgctttt
gtcatgccgacgcactgccccgagtgcgggtcgccgcttgcccctgcgaaggaaggcgat
atcgatcttcggtgcccgaacacacgctcctgtccggcgcaggtgcggggccgtgtcgag
cacatcggttcgcgcggcgctctcgatatcgaggggctcggggaggtgtcggccgctgcg
ctcacgcatccgctgcggcctgaggtgccgccacttgtcaccgaagcgggattgttcgat
ctgcgcgccgaagacctctttccgatcgatgtcgaggtgcgggatgccgagacggggctc
gttcggctagacgccaacggagcgccggatgcgcgcagtccgttccggcgtcagcgcaag
gctccgctcgacggtcgcgcaccgaccgcgtcgcgtccggatcccgccttcgatcccgac
ggacctttcgatggggatgctgatttcatcctttcggcagcagcctacgagctgctcgag
aacgttgagcgcgcgaagacaaaggaactgtggcggttcctcgtcgcgctcagcatccgt
cacgtcggaccggtcgccgcgcgggctctggcgcagtggttcggatcgatcgacgccatc
cgctcggcctcccgcgaggaactcgccgccgtcgagggcgtcggcccgatcatcgcggat
gcgatcatcgactggttcgaggttgattggcacgtcgagatcgtcgagcgctgggttgcg
gccggcgcgcagctggcgactcccggtcatccgggacctggtgctgcggtcgtcgacggc
ggcgtgctcgagggtgtgactgtcgtggcgacgggaaccctcgaggggtacacgcgcgag
ggtgcgcaggaggcgatcatcgcggccggcggcaaggcggcgtcaagcgtgtcgaagaag
acggattttgtggcggcgggaccgggcgccggctcgaagctcgcgaaggccgaggagctt
ggtgtccgggtcatcgatgcggcccagttccgcatcctcgtcgagcaaggccccgaggcg
ttgggcgagtag
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integrated database retrieval system
