Mycolicibacterium smegmatis MC2 155: MSMEI_2302
Help
Entry
MSMEI_2302 CDS
T02191
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msg
Mycolicibacterium smegmatis MC2 155
Pathway
msg03030
DNA replication
msg03410
Base excision repair
msg03420
Nucleotide excision repair
msg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSMEI_2302 (ligA)
03410 Base excision repair
MSMEI_2302 (ligA)
03420 Nucleotide excision repair
MSMEI_2302 (ligA)
03430 Mismatch repair
MSMEI_2302 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msg03032
]
MSMEI_2302 (ligA)
03400 DNA repair and recombination proteins [BR:
msg03400
]
MSMEI_2302 (ligA)
Enzymes [BR:
msg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MSMEI_2302 (ligA)
DNA replication proteins [BR:
msg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MSMEI_2302 (ligA)
DNA repair and recombination proteins [BR:
msg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MSMEI_2302 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSMEI_2302 (ligA)
MMR (mismatch excision repair)
DNA ligase
MSMEI_2302 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MSMEI_2302 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
PGRL1_N
Motif
Other DBs
NCBI-ProteinID:
AFP38772
UniProt:
A0QUW7
LinkDB
All DBs
Position
2444785..2446890
Genome browser
AA seq
701 aa
AA seq
DB search
MSEKATGEVEAELPEHPDADERRRWQELADEVREHQFRYYVKDAPIISDAEFDKLLRELQ
ALEDAHPELRTPDSPTQLVGGAGFATEFAPAEHLERMLSLDNVFDSDELTAWAARISSET
GDAAHFLCELKIDGVALSLVYRDGRLERGATRGDGRTGEDVTLNARTIDDIPERLTPSDE
FPVPAVLEVRGEVFFRVADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRKLR
MICHGIGYTEGFTPASLHDAYRALGAWGLPVSEHTTKVSTVAEVAERIAYWGEHRHDVEH
EIDGVVVKVDEVALQRRLGATSRAPRWAVAYKYPPEEATTKLLDIRVNVGRTGRVTPFAY
MEPVKVAGSTVGLATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGTEREF
EFPTHCPECGTELAPAKEGDADIRCPNSRSCPAQLRERLFHLAGRGAFDIEGLGYEAATA
LLAAQVIPDEGDLFTLTADDLLRTELFTTKKGELSANGKRLLANLTKAKEQPLWRVLVAL
SIRHVGPTAARALATEFGSLEAIEAASEEELAAVEGVGPTIAAAVKDWFTVDWHRAIVDK
WRAAGVRMADERDASIERTLEGLSIVVTGSLAGFSRDQAKEAIIARGGKAAGSVSKKTAY
VVAGDAPGSKYDKAVELGVPVLDEDGFRRLLEQGPPVEPAE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagaaggcaaccggagaagtcgaagcggaactgcccgaacatcctgacgccgac
gagcggcggcgctggcaggaacttgccgacgaggtgcgcgaacaccagttccggtactac
gtcaaggacgcgccgatcatctcggacgcggagttcgacaagctgctgcgcgaactgcag
gcgctcgaggacgctcatcctgagttgcggacgcccgattcacccacccagctggtgggc
ggcgccgggttcgccaccgagttcgcgcccgccgagcatctggaacggatgctgtcgctg
gacaacgtgttcgattccgacgagctgaccgcgtgggccgcccgcatcagcagcgagacc
ggcgacgcggcgcatttcctgtgcgagctcaagatcgacggtgtcgcgctgtcactggtg
taccgcgacggcaggctcgagcggggcgccacccgcggcgacgggcgcaccggcgaggac
gtcacgctcaacgcgcgcaccatcgacgacatccccgagcggttgacgccctccgacgag
ttcccggtgcccgccgtgctcgaagtgcgcggcgaggtcttcttccgtgtcgccgacttc
gaggagctcaacgcgggtctggtggccgagggcaagccgccgttcgccaatccccgcaac
agcgcggccggttcgctgcgccagaagaaccccgcggtcaccgcgcgccgcaagctgcgg
atgatctgtcacggcatcggatacaccgagggcttcaccccggcgtcgctgcacgacgcc
taccgcgcactcggggcgtggggcctaccggtgtccgagcacaccaccaaggtgtccacc
gtcgccgaggtcgccgaacgcatcgcctactggggcgagcaccgccacgacgtcgagcac
gaaatcgacggtgtggtggtcaaggtcgacgaggtcgcgttgcaacgccgcctcggggcg
acctcgcgcgcgccgcgctgggccgtggcctacaagtacccgcccgaggaggccaccacc
aagctgctcgacatccgggtcaacgtcggccgcaccggcagggtcacgccattcgcctac
atggaaccggtcaaggtggccgggtccaccgtgggcctggcgaccctgcacaacgcctcg
gaggtcaaacgcaagggcgtgctgatcggcgacaccgtggtgatccgcaaggctggcgac
gtcatccccgaggtgctggggcctgtcgtcgacctgcgcgacggcaccgagcgggagttc
gagttcccgacgcattgccccgagtgcggaaccgagttggccccggcgaaggagggcgac
gccgacatccgctgccccaactcgcgcagctgcccggcgcagctgcgggagcggctgttc
cacctcgccggtcgtggtgccttcgacatcgaggggctgggctacgaggcggccacggct
cttcttgccgcacaggtgatcccggatgagggggacctgttcaccctcaccgccgatgac
ctgctgcgcaccgaactgttcaccaccaagaagggtgagctctcggccaacggcaagcgt
ctgctggccaacctcaccaaggccaaggagcagccgctgtggcgggtgctcgtcgcgctg
tccatccggcatgtcgggcccaccgcggcgcgcgcactggccaccgagttcggcagcctg
gaggccatcgaggcggcgtcggaagaggagctggccgcggtcgagggcgtcggccccacc
atcgccgcggccgtcaaggactggttcaccgtcgactggcaccgtgcgatcgtcgacaag
tggcgcgcggccggggtgcgcatggccgacgaacgcgacgccagcatcgagcgcacgctc
gaaggactctcgatcgtggtgaccggatcgctggccggcttcagccgcgaccaggccaag
gaggcgatcatcgcgcgcggcggcaaggccgcgggttcggtgtcgaagaagaccgcctac
gtggtggccggcgacgcgccagggtccaagtacgacaaggcggtcgaactcggcgtgccg
gtcctcgacgaggacgggttccgccggctgctcgaacaggggccgccggtcgagccggcc
gagtag
DBGET
integrated database retrieval system
