Marinobacter shengliensis: MAALD49_21700
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Entry
MAALD49_21700 CDS
T09258
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mshe
Marinobacter shengliensis
Pathway
mshe03030
DNA replication
mshe03410
Base excision repair
mshe03420
Nucleotide excision repair
mshe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mshe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MAALD49_21700 (ligA)
03410 Base excision repair
MAALD49_21700 (ligA)
03420 Nucleotide excision repair
MAALD49_21700 (ligA)
03430 Mismatch repair
MAALD49_21700 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mshe03032
]
MAALD49_21700 (ligA)
03400 DNA repair and recombination proteins [BR:
mshe03400
]
MAALD49_21700 (ligA)
Enzymes [BR:
mshe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MAALD49_21700 (ligA)
DNA replication proteins [BR:
mshe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MAALD49_21700 (ligA)
DNA repair and recombination proteins [BR:
mshe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MAALD49_21700 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MAALD49_21700 (ligA)
MMR (mismatch excision repair)
DNA ligase
MAALD49_21700 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MAALD49_21700 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
BEH14802
LinkDB
All DBs
Position
complement(2380029..2382065)
Genome browser
AA seq
678 aa
AA seq
DB search
MSQVSADIQQRVEQLRAALDDHNYYYYVLDDPRIPDAEYDRLFRELQTLEADYPELATDN
SPTRRVGSAAETSFEEITHRLPMLSLDNAFSDDELRDFDRRVRDRLATEDPVEYVCEPKL
DGLAVSLHYEQGVLTRAATRGDGYTGEDITANIRTIPSVPLTLRGDDYPDLVEVRGEVYM
PKAGFEQLNRRLAEQGEKPFVNPRNAAAGSLRQKKSTVTAKRPLELCAYSMAVTDESLLP
ETHWESLQRVRGWGFRINPEMRKAKGVEACLEAYQELMAKRDTLPYEIDGIVFKVNRLDL
QQQLGFVSRAPRWAIAHKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNA
TLHNMDEIRRLDVHIGDTVFIRRAGDVIPQVVKVVPEKRPKGAAEVVLPSQCPVCDSDIV
QIEGEAVARCSGGLYCPAQRKEAIRHYASRKAMDIEGLGDRLIEVLVDEGMVNTVADLYR
LTKFQLSSLDRMGDKSAGNLVAAIDRARKPVLWRFLYALGIREVGEATAKSLASHFGTLE
AISAADDEALQAVPDVGPIVAGHIRSFFDQPHNQETLQALKDTGVSWQEEQVVPAEAKPL
AGETWVLTGTLSQMTRDQAKEKLEKLGAKVAGSVSKKTACVVAGEAAGSKLTKAEQLGVP
VLDEEGLLALLEEHGVAG
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagccaggtttctgccgatatccagcagcgcgtggaacagttgcgcgctgccctggac
gatcacaattactactattacgttctggatgaccccaggatacccgatgctgaatacgat
cggctgttccgtgaactccagacactggaagcggactacccggaacttgccacagataac
tcgcctacccggcgggtcggcagtgccgcggaaaccagctttgaagaaatcacccatcga
ttgcccatgctgtcattggacaatgcgttcagtgacgacgagctccgtgatttcgaccgc
cgagtgcgtgatcgcctggcaaccgaggatccggtggaatatgtctgtgagcccaagctg
gatggccttgcggtcagcctgcactatgagcagggtgtattaactcgggccgccacccga
ggcgacggttataccggtgaggatatcacggccaatatacgcaccattccgtcagtcccc
ttgaccttgcggggcgacgactatccggatctggtggaagttcggggtgaagtctatatg
cccaaggcggggtttgagcaactgaaccggcgcctcgctgagcaaggcgaaaagcccttt
gtaaaccccagaaatgccgctgccggtagcctgcgccagaagaaatcaacagtcaccgcc
aagcgccccctggagctgtgcgcctacagcatggcggtcaccgacgaaagcctgctgcct
gaaacccactgggaaagcttgcagcgggttcggggctgggggtttcgtattaacccggaa
atgcgcaaagccaagggggttgaagcgtgcctcgaggcgtaccaggagctgatggccaag
cgcgacacgctgccatacgaaatagacggtatcgtgttcaaggtgaatcgcctggatttg
cagcagcagctgggctttgtgtccagggcgccccggtgggccattgcccacaaattcccc
gcccaggaagaactgaccgttattgaagatgtggagttccaggtgggcaggaccggggct
gtcacgcctgttgcccggctcaaaccggtgtttgtgggtggcgtgaccgtttccaacgca
acactccacaacatggacgagattcgccggctggatgtgcacatcggtgatacggtgttc
atacgccgcgctggagatgtcattccgcaagtggtgaaggtggttccggagaaacgcccg
aagggcgcagcggaagtggtcctgccgagccaatgcccggtctgtgactcggacatcgtc
cagatagaaggggaggcggtcgcccgttgttccggggggctgtactgccccgcccagcgc
aaggaagccattcgccattacgcctcccgcaaggccatggatatcgaaggtctgggcgac
cggctgattgaagtgctggtggatgaaggcatggtgaacaccgtcgcggacctgtaccga
ctaaccaaattccagttatccagccttgaccgtatgggggataaatcagcaggcaacctt
gtggcggccattgaccgggcccgtaagccggtgctgtggcggttcctctacgccctgggt
attcgtgaggtgggtgaggcgaccgcgaagtccctggcatcgcatttcggtacccttgag
gcaatttcagccgccgatgacgaggcgctgcaggcggtaccggacgttggtcccatcgtg
gccggccatattcgcagtttcttcgaccagccccacaaccaggaaaccctgcaggctttg
aaagacaccggggtaagctggcaggaagaacaggttgtccctgccgaggccaaacccctg
gccggcgaaacctgggtgctgaccggcaccctgtcacagatgacccgggaccaggcgaag
gaaaaactggagaagctgggagccaaggtcgcgggcagcgtttcgaagaaaaccgcctgc
gtggtggcgggtgaggctgctggctccaagctgaccaaggcagaacagctgggagtgcct
gtcctggatgaagaggggcttctcgccctcttagaggagcatggcgtagcaggctga
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