Mycobacterium shigaense: MSG_01556
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Entry
MSG_01556 CDS
T05717
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mshg
Mycobacterium shigaense
Pathway
mshg03030
DNA replication
mshg03410
Base excision repair
mshg03420
Nucleotide excision repair
mshg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mshg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSG_01556 (ligA)
03410 Base excision repair
MSG_01556 (ligA)
03420 Nucleotide excision repair
MSG_01556 (ligA)
03430 Mismatch repair
MSG_01556 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mshg03032
]
MSG_01556 (ligA)
03400 DNA repair and recombination proteins [BR:
mshg03400
]
MSG_01556 (ligA)
Enzymes [BR:
mshg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MSG_01556 (ligA)
DNA replication proteins [BR:
mshg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MSG_01556 (ligA)
DNA repair and recombination proteins [BR:
mshg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MSG_01556 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSG_01556 (ligA)
MMR (mismatch excision repair)
DNA ligase
MSG_01556 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MSG_01556 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
HHH
PTCB-BRCT
HHH_8
Motif
Other DBs
NCBI-ProteinID:
BAX91712
UniProt:
A0A1Z4EFH9
LinkDB
All DBs
Position
1601771..1603846
Genome browser
AA seq
691 aa
AA seq
DB search
MSSPDADPVPADVRRQWHHLADEVREHQFRYYVRDAPIISDAEFDRLLRRLAALEDEHPE
LRTPDSPTQLVGGAGFATEFTSAEHLERMLSLDNVFSTDEFDAWAARVHADVGNDVPFLC
ELKIDGVALALVYRDGRLVRAATRGDGRTGEDVTNNARTIDDVPERLTPSDAYPIPAVLE
VRGEVFFRVADFEALNAALVEDGKTPFANPRNSAAGSLRQKDPAVTARRKLRMICHGIGH
TEGFRPASLHDAYLALGAWGLTVSEHTTRVDNAAGALERIAYWGEHRHDVDHEIDGVVVK
VDDFALQRRLGSTSRAPRWAIAYKYPPQEVQTKLLDIRVNVGRTGRVTPFAFMEPVTVSG
STVALATLHNAAEVKRKGVLIGDTVVLRKAGDVIPEVLGPVADLRDGTEREFVMPTHCPE
CGTELAPAKEGDADIRCPNARSCPAQLRERVFHVAGRGAFDIEALGYEAATALLTAGVIS
DEGDLFSLTEDDLLRTELFTTKSGAVSANGRRLLANLDKAKSQPLWRVLVALSIRHVGPT
AARALATEFGELKAIEAASTEQLAAVEGVGPTIAAAVTEWFTVDWHRAIVEKWRAAGVRM
ADERDASTQRTLEGLTIVVTGSLAGFSRDEAKEAILVRGGRSAGSVSKKTDYVVAGDSPG
SKYDKAVELGVPILDEDGFRTLLAQGPAAEK
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtgagttcgcccgacgctgacccggtccctgccgacgttcgccggcaatggcaccacctg
gccgacgaggtgcgcgaacatcagtttcgctactacgtgcgtgacgcgccgatcatctcc
gacgccgagttcgaccggctgctgcggcggttggccgccctcgaggacgagcatcccgag
ctgcgcacccccgattcgccgacgcagctcgtcggcggcgccgggttcgccaccgaattc
acctcggccgagcatctggaacggatgctgtcgctggacaacgtgttcagcaccgacgaa
ttcgacgcctgggccgcgcgtgtgcacgccgacgtcggcaacgacgtgcccttcctgtgc
gagctcaagatcgacggggtcgccctggcgctggtctaccgcgacggccggctggtccgg
gcggccacccggggtgacggccgcaccggcgaggacgtcacgaacaacgcgcgcaccatc
gacgacgtcccggaacggctgacacccagcgacgcctatccgatccccgccgtcctcgag
gtgcgcggtgaggtcttcttccgggtcgccgacttcgaggccctcaacgccgcgctggtc
gaggacggcaagacgccgttcgccaatccccgcaacagtgccgccggttcgctgcgccag
aaggatcccgcggtgaccgcacgccgcaagctgcggatgatctgccatggaatcgggcac
accgagggattccgcccggccagcctgcacgacgcctacctggcgctgggcgcctggggc
ctgaccgtctccgaacacaccacccgggtggacaacgcggccggtgcgctggaacggatc
gcctactggggagagcaccgccacgacgtcgatcacgaaatcgacggtgtggtagtcaaa
gtcgacgacttcgcgctgcaacgcaggctggggtcgacctctcgagcgccgcgctgggca
atcgcctacaaatatccgccgcaggaggtgcagaccaagctgctcgacatccgggtcaac
gtcgggcggaccggacgggtgacgccgttcgcgttcatggagccggtcaccgtctccggg
tcgacggtcgctctggccaccctgcacaacgccgcagaggtcaaacgcaagggcgtactg
atcggcgacaccgtggtgctccgcaaggccggcgacgtcattcccgaggtcctcggcccc
gtcgccgatctgcgcgacggcaccgagcgcgaattcgtgatgcccacgcattgtcccgag
tgcggcaccgagctggcgccggccaaggagggtgatgccgacatccggtgcccgaatgcc
cggtcctgcccggcgcagttgcgggagcgggtgtttcacgtcgccggtcgcggcgcgttc
gacatcgaggcgctcggctatgaggccgcgaccgcgctgctgacggccggggtgatctcc
gacgagggggacctgttctcgctgaccgaggacgacctgctgcgcaccgagttgttcacg
accaaaagcggtgcggtgtccgcgaacggcagacggctgctggccaacctcgacaaggcc
aagtcgcagccgctgtggcgggtgctggtggcgctgtcgatccggcacgtcggcccgacg
gccgcccgcgcgctggccaccgaattcggcgaactaaaggccatcgaggcggcctcgacc
gaacagctggccgccgtcgagggcgtcggtccgaccatcgccgccgcggtcaccgagtgg
ttcaccgtcgactggcaccgcgcgatcgtcgagaagtggcgcgcggccggcgtgcggatg
gccgacgaacgcgacgccagcacgcagcgcaccctcgagggtctgaccatcgtcgtcacc
ggttcgctagccggtttctcccgcgacgaggccaaggaggcgatcctggtacgcgggggc
aggtccgccggttcggtgtcgaagaagaccgactacgtcgtggcgggcgactcacccggg
tcgaagtacgacaaggcggtggaactcggggtgccgatcctcgacgaggacggctttcgc
acgctgttggcccaggggccggccgccgaaaagtga
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integrated database retrieval system
