Mycobacterium shinjukuense: MSHI_06670
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Entry
MSHI_06670 CDS
T07415
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mshj
Mycobacterium shinjukuense
Pathway
mshj03030
DNA replication
mshj03410
Base excision repair
mshj03420
Nucleotide excision repair
mshj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mshj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSHI_06670 (ligA)
03410 Base excision repair
MSHI_06670 (ligA)
03420 Nucleotide excision repair
MSHI_06670 (ligA)
03430 Mismatch repair
MSHI_06670 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mshj03032
]
MSHI_06670 (ligA)
03400 DNA repair and recombination proteins [BR:
mshj03400
]
MSHI_06670 (ligA)
Enzymes [BR:
mshj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MSHI_06670 (ligA)
DNA replication proteins [BR:
mshj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MSHI_06670 (ligA)
DNA repair and recombination proteins [BR:
mshj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MSHI_06670 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSHI_06670 (ligA)
MMR (mismatch excision repair)
DNA ligase
MSHI_06670 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MSHI_06670 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
BBX72761
UniProt:
A0A7I7MKC1
LinkDB
All DBs
Position
727423..729513
Genome browser
AA seq
696 aa
AA seq
DB search
MSAAEEPTPPDVLRQWRELAEEVREHQFRYYVRNAPTISDAEFDTLLRRLEALEERYPEL
RTPDSPTQLVGGAGFATEFEPVEHLERMLSLDNAFSADELTAWAGRVHAEVGDDAHYLCE
LKIDGVALSLVYRGGRLTRASTRGDGRTGEDVTLNARTIADVPERLTASDAYPVPEVLEV
RGEVFFRVADFQALNTSLIEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHT
EGFRPATLHDGYRALRDWGLPVSEHTTLVDDLAGVRERIDYWGEHRHEVGYEIDGVVVKV
DEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGS
TVAQATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPTTCPEC
GTALAPEKEGDVDIRCPNARGCPGQLRERVFHVASRSALDIEVLGYEAGVALLQAKVIAD
EGDLFALTEQDLLRTDLFRTKAGELSANGRRLLANLDKAKAAPLWRVLVALSIRHVGPTA
ARALATEFGSLDAIAAASTEQLAAVEGVGPTIADAVAEWFTLDWHREIVAKWRAAGVRMA
DERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSRKTSYVVVGDSPGS
KYDKAVELGVPILDEDGFRKLLAGGPPDTGDADAVP
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcggctgaagaacccacaccgccggatgtgttgcggcagtggcgggaactggcc
gaggaggtgcgcgaacaccagttccgctactacgtgcgtaacgcgcccaccatctccgac
gcggagttcgacacgctgctgcgccgcctggaggccctcgaggagcggtatccggagctg
cgcacccccgactcgcccacccagctggtcggcggcgccgggttcgccacggaattcgag
cccgtcgagcacctggaacggatgctgagcctggacaacgcgttcagcgccgacgaactc
accgcctgggccggtcgcgtccacgccgaggtcggcgacgacgcccactatctgtgtgag
ctcaagatcgacggcgtcgcgctgtccctggtctaccgcggcggacggctgacccgggcc
tccacccggggggacggtcgcaccggcgaggatgtcaccctcaacgctcgcaccatcgcc
gacgtccccgagcggctcaccgccagcgacgcctacccggtgcccgaggtcctcgaggtc
cgcggcgaggtgttctttcgggtggccgacttccaggcgctcaacaccagcctgatcgag
gagggcaaggcgccgttcgccaacccccgcaacagcgcggcggggtcgctgcgccagaaa
gatccggcggtcaccgcgcgccgccggctgcggatgatctgccacgggctgggccacacc
gaaggctttcgaccggccaccctgcacgacggctaccgggcgctgcgggactgggggctg
ccggtttccgagcacaccacgctggtggacgacctggccggtgtgcgcgagcggatcgac
tactggggcgagcaccgtcacgaggtgggctacgaaatcgacggcgtggtcgtcaaggtc
gacgaggtggcgctgcagcggcggctgggttccacctcgcgggccccgcgctgggccatc
gcctacaaatacccacccgaggaggcccagaccaagctgctcgacatccgggtgaacgtg
ggccgcaccgggcggatcacaccgttcgcgttcatgacaccggtcaaggtggccgggtcg
acggtggcgcaggccacgttgcacaacgcctcggaggtcaagcgcaagggcgtgctgatc
ggcgacaccgtggtgatccgcaaggccggcgacgtgatccccgaggtgctaggacccgtg
gtcgacctgcgcgacggatccgaacgcgaattcgtcatgcccaccacgtgcccggagtgt
ggtaccgcgttggcgccggagaaggagggcgacgtcgacatccgttgccccaacgcccgc
ggctgcccggggcaactgcgggagcgagtttttcacgtcgccagccgcagcgccttggat
atcgaggtgctgggctacgaggcgggtgtggcgctcttgcaggcgaaggtgatcgccgac
gagggcgacctgttcgcgctgaccgagcaggacttgctgcgcaccgacctgttccgcacc
aaggccggcgaattatcggccaacggccggcggctgctggccaacctcgacaaggccaag
gccgcaccgctgtggcgggtgctggtggcgctgtcgatccgccatgtcggcccgaccgcg
gcacgggccctggccaccgagttcggcagcctcgacgccattgccgccgcgtccaccgag
cagctggccgccgtcgagggggtggggccgaccattgccgacgcggtcgccgagtggttc
accctcgactggcaccgcgagatcgtcgccaagtggcgggcggccggggtgcggatggcc
gacgagcgtgacgagagtgtgccacgcaccctggccgggctgaccatcgtggtcaccggc
tcgttgacgggtttctcccgcgacgacgccaaggaagcgatcgtggcccgcggcggcaag
gccgccgggtcggtgtcgaggaagacctcctatgtcgtggtcggcgactcgcctggctcc
aaatacgacaaggcggtggagctgggggtgcccattctcgacgaggacgggtttcgaaaa
ctgttggccggcggccccccggacaccggcgacgccgacgcggtgccatag
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