Mycobacterium shottsii: MSHO_55550
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Entry
MSHO_55550 CDS
T07303
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msho
Mycobacterium shottsii
Pathway
msho03030
DNA replication
msho03410
Base excision repair
msho03420
Nucleotide excision repair
msho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSHO_55550 (ligA)
03410 Base excision repair
MSHO_55550 (ligA)
03420 Nucleotide excision repair
MSHO_55550 (ligA)
03430 Mismatch repair
MSHO_55550 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msho03032
]
MSHO_55550 (ligA)
03400 DNA repair and recombination proteins [BR:
msho03400
]
MSHO_55550 (ligA)
Enzymes [BR:
msho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MSHO_55550 (ligA)
DNA replication proteins [BR:
msho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MSHO_55550 (ligA)
DNA repair and recombination proteins [BR:
msho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MSHO_55550 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSHO_55550 (ligA)
MMR (mismatch excision repair)
DNA ligase
MSHO_55550 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MSHO_55550 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Auto_anti-p27
BRCT_2
DUF8259
Motif
Other DBs
NCBI-ProteinID:
BBX60210
UniProt:
A0A7I7LKT8
LinkDB
All DBs
Position
complement(5386612..5388675)
Genome browser
AA seq
687 aa
AA seq
DB search
MTPEVLRQWQELAEQVREHQFRYYVRDAPVITDAEFDELLRRLEALEEQYPELRTPDSPT
QLVGGAGFATEFEPVEHLERMLSLDNAFNTEELTAWAGRIHADVGDRAAYLCELKIDGVA
LSLVYEGGRLTRASTRGDGRTGEDVTLNARTIEDVPERLSHSEDHRMPEVLEVRGEVFFR
VADFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHTEGFRPAT
LHQAYLALQAWGLPVSQHTTLVADLAGVQERIDYWGEHRHEVDHEIDGVVVKVDDVALQR
RLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVAQATL
HNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPTTCPECGTPLAPE
KEGDADIRCPNTRSCPGQLRERVFHVSSRNALDIEMLGYEAGAALLSAQVIGDEGDLFGL
TEEELLRTDLFRTKAGDLSANGRRLLANLDKAKAAPLWRVLVALSIRHVGPTAARALATE
FGSIDAIVAATTEQLAAVEGVGPTIASAVSEWFTVDWHREIVEKWRAAGVRMADERDDSV
PRTLAGVTVVVTGSLPGFSRDEAKEAIVTRGGKAAGSVSKKTSYVVAGDAPGSKYDKAVE
LGVPILDEDGFRKLLEQGPPAEVGEPT
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgactcctgaggttttgcggcagtggcaggaactggccgagcaggtgcgtgaacaccag
tttcgctactacgtgcgcgacgcgccggtgatcaccgacgcggaattcgacgaattgctg
cgccggctggaggcgctcgaagaacagtatcccgagctacgcacacccgattcgcccact
cagctggtcggtggcgccggtttcgcgaccgagttcgaacccgtcgagcatctggaaaga
atgctcagcctcgacaacgcgttcaacaccgaggaactcaccgcctgggccggccgcatc
cacgccgatgtcggcgacagggcggcctacttgtgtgagctcaagatcgacggcgtggcg
ctgtcgctggtgtacgaaggggggcggctgacccgggcctccacccggggcgacggccgc
accggcgaagatgtcacgctcaatgcccgcaccatcgaggacgttccggaacggctttcc
catagcgaggaccaccgcatgcccgaggtgctcgaggtccgcggtgaggtgttctttcgg
gtggctgatttccaggcgctcaacgcgagcttggtcgaggagggcaaggcaccgttcgcc
aacccccgcaacagcgcggccgggtcgttgcggcaaaaggacccggcggtcacggcccgg
cgcagattgcggatgatctgccatgggctgggccacaccgaaggctttcgcccggcgacg
ctgcaccaggcctacctggcgttgcaggcctgggggctgccggtttcccagcacaccacg
ttggtcgccgacctggccggggtacaggagcgcatcgactactggggcgagcatcgccac
gaggtcgaccacgaaatcgacggcgtggtggtcaaagtcgacgatgtcgccctgcagcgg
cggctcggttccacctcacgggcaccgcgctgggcgatcgcgtacaagtacccgcccgag
gaagcccagaccaagctgctcgatattcgcgtcaacgtcggccgaaccgggcgagtcacg
ccctttgcgtttatgacgccggtgaaggtcgcgggctcgacggtggcacaagccaccttg
cacaacgcgtcggaggtcaagcgcaagggcgtgctgatcggcgacacggtggtgatccgc
aaggccggtgacgtgatccccgaagtgttgggtccggtggtcgacctccgtgatgggtcc
gaacgcgaattcgtcatgcccacaacgtgtccggagtgcggcacgccgctggccccggag
aaggagggcgacgccgacatccgttgtccgaatacccgcagctgtccggggcagttgcgg
gagcgggttttccatgtctccagccgcaatgccctcgacatcgagatgctgggctatgag
gctggcgccgcgctgctttcggcgcaggtgatcggcgatgaaggcgacctgttcggactc
accgaggaagagctgctgcgcaccgacctgttccgcaccaaggccggtgacttgtccgcc
aacggccggcggctactggccaatctggacaaggcgaaggcggcgccactatggcgcgtg
ctggtggcgttgtccatccgccatgtcggaccgacagcggcacgcgcactagccaccgag
ttcggcagcatcgatgcgatcgtcgccgcgaccaccgaacagttggccgccgttgaggga
gtgggaccgacgatcgcctccgccgtttcggagtggttcaccgtcgactggcaccgcgag
atcgtcgagaagtggcgggccgccggtgtgcggatggccgatgagcgcgacgacagtgtg
ccgcgcacactggccggggtaaccgtggtggtcaccggctcgttgcccggattctcacgg
gacgaggccaaggaggcgatcgtgacccgtggcggcaaagccgccggttcggtatcgaaa
aagacctcctacgtcgtcgccggtgacgcacccggctcgaagtacgacaaggcggtcgaa
ctcggcgtgcccatcctcgacgaagatgggtttcgaaagttgttggagcagggccccccg
gccgaagtgggggagccgacctag
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integrated database retrieval system
