Mesoterricola silvestris: METEAL_36100
Help
Entry
METEAL_36100 CDS
T09355
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msil
Mesoterricola silvestris
Pathway
msil03030
DNA replication
msil03410
Base excision repair
msil03420
Nucleotide excision repair
msil03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
METEAL_36100 (ligA)
03410 Base excision repair
METEAL_36100 (ligA)
03420 Nucleotide excision repair
METEAL_36100 (ligA)
03430 Mismatch repair
METEAL_36100 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msil03032
]
METEAL_36100 (ligA)
03400 DNA repair and recombination proteins [BR:
msil03400
]
METEAL_36100 (ligA)
Enzymes [BR:
msil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
METEAL_36100 (ligA)
DNA replication proteins [BR:
msil03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
METEAL_36100 (ligA)
DNA repair and recombination proteins [BR:
msil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
METEAL_36100 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
METEAL_36100 (ligA)
MMR (mismatch excision repair)
DNA ligase
METEAL_36100 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
METEAL_36100 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
BDU74436
UniProt:
A0AA48KAA9
LinkDB
All DBs
Position
4289945..4291942
Genome browser
AA seq
665 aa
AA seq
DB search
MSTDPRTRMQELAAQVLEHRRRYFVLDQPILSDAEYDALERELRDLEAAFPLLADPNSPT
QRVGAAPLESFAKARHRTPMLSLDNTYSEEDLREWEARVLKGLGGMEPLYSAELKVDGLS
LSLLYEGRSLVRAVTRGNGEEGEDVTENARTIADIPLTLPAEAPEALEVRGEVFLSRRRW
EELNRERDARGEARFANPRNAAAGTMKQLDSRITAERRLSFLPWQLPGAARHSEGMDQLA
AWGFNRMPAHAEGPFADMAGFIRDQAGPRLLLPFDTDGVVLKVDDLALQERLGSTDRVPR
WAIAFKYPGLQATTTLLGITWQVSRAGKLTPVAELEAVEVAGSTVRRATLHNADELARLG
VRVGCKVFVEKGGEVIPKVVAVVPESMPEGAPEPQVPSSCPVCGGAVGKDSDEEVAWRCQ
NPECPAKITARLQHLGSRVALDIEGLGDALVEQVAPRFAQPWDVFSLLEDPKQGLAYLAG
LERMGEKSARNVLEGLDAARRKPLSRWIHALGIPMVGARTAELLAEAFPTLKDLWDAEEQ
RLLAVEEVGPKVAAGLKAFAALHPALPAQLEALGVAPAPSAPRDTAGLPLAGEVAVVTGT
LPTLGREEAEALLKRLGAKVTGAVSPKTTLLVAGEKAGSKLAKAQALGIPVRDEAWLLAH
GTMEP
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgatccccgcacccgaatgcaggaactggcagcccaggtgctggagcaccgc
cgccggtatttcgtcctggaccagcccatcctttccgacgcggagtacgacgccctggaa
agggagctgcgggacctggaggcggccttccccctcctcgccgaccccaacagccccacc
cagcgcgtgggcgccgcgcccctggagtccttcgccaaggcccggcaccgcacccccatg
ctcagcctcgacaacacctattccgaggaggacctgcgggaatgggaggcccgggtgctc
aagggcctcgggggcatggagccgctctactccgccgaactgaaggtggacgggctctcc
ctttcgctcctctacgaggggcggagcctggtgcgggccgtgacccggggcaacggcgag
gagggggaggacgtcacggagaacgcccgcaccatcgccgacatccccctcaccctgccg
gcggaggccccggaggccctggaggtgcggggtgaggtcttcctctcccggcgccggtgg
gaggagctgaaccgggagcgggacgcccggggcgaggcgcgcttcgccaatccccgcaac
gcggccgccggcaccatgaagcagctcgacagccgcatcaccgccgaacgccgcctctcc
ttcctgccctggcagctcccgggcgcggcccgccacagcgagggcatggaccagctcgcc
gcctggggcttcaaccgcatgccggcccacgccgagggccccttcgcggacatggccggg
ttcatccgggaccaggccgggccgcggctgctcctgcccttcgacacggacggggtggtg
ctcaaggtggacgacctcgcgctccaggagcgcctgggctccacggaccgggtcccccgg
tgggccatcgcgttcaagtacccggggctccaggccaccacgacgctcctgggcatcacc
tggcaggtgagccgcgccggcaagctcacgcccgtggccgaactggaggcggtggaggtg
gcggggtccacggtgcgccgggccaccctgcacaacgccgacgagttggcgcgcctgggg
gttcgggtgggctgcaaggtcttcgtggagaagggcggcgaggtcatccccaaggtggtg
gccgtggtgcccgaatccatgccggaaggcgccccggagccccaggtgccgtcgtcctgc
cccgtgtgcggcggcgccgtgggcaaggactccgacgaggaggtggcctggcgctgccag
aaccccgagtgccccgccaagatcaccgcccggctccagcacctgggcagccgcgtggcc
ctggacatcgaaggcctgggcgacgccctggtggaacaggtggcgccgcgcttcgcccag
ccctgggacgtgttcagcctcctggaggaccccaagcagggcctggcctacctggccggc
ctggagcgcatgggggagaagagcgcccgcaacgtcctggagggcctggacgcggcccgc
cgcaagcccctgtcccggtggatccacgccctgggcatccccatggtgggggcccgcacc
gccgaactcctggcggaggccttccccaccctgaaggacctgtgggacgccgaggagcag
cgcctcctggccgtggaggaggtgggccccaaggtcgccgcgggcctcaaggccttcgcg
gccctgcaccccgccctgcccgcgcagttggaggccctgggcgtcgcccccgcgcccagc
gcgccccgggacaccgcgggcctgcccctggccggggaggtggcggtggtcacgggcacc
ctccccaccctgggccgggaggaggccgaggccctcctcaagcgcctgggggccaaggtc
accggcgccgtctccccgaagaccaccctcctggtcgccggcgagaaggccggatccaag
ctcgccaaggcccaggccctgggcatccccgtgcgggacgaggcctggctcctggcccat
ggcactatggaaccgtga
DBGET
integrated database retrieval system
