Mycobacterium simiae: MSIM_08450
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Entry
MSIM_08450 CDS
T07396
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msim
Mycobacterium simiae
Pathway
msim03030
DNA replication
msim03410
Base excision repair
msim03420
Nucleotide excision repair
msim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSIM_08450 (ligA)
03410 Base excision repair
MSIM_08450 (ligA)
03420 Nucleotide excision repair
MSIM_08450 (ligA)
03430 Mismatch repair
MSIM_08450 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msim03032
]
MSIM_08450 (ligA)
03400 DNA repair and recombination proteins [BR:
msim03400
]
MSIM_08450 (ligA)
Enzymes [BR:
msim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MSIM_08450 (ligA)
DNA replication proteins [BR:
msim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MSIM_08450 (ligA)
DNA repair and recombination proteins [BR:
msim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MSIM_08450 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSIM_08450 (ligA)
MMR (mismatch excision repair)
DNA ligase
MSIM_08450 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MSIM_08450 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
HHH_8
Motif
Other DBs
NCBI-ProteinID:
BBX39394
LinkDB
All DBs
Position
complement(923388..925472)
Genome browser
AA seq
694 aa
AA seq
DB search
MSSPEADPVPPEIRRQWRELADEVREHQFRYYVRDAPVISDADFDQLLRRLAALEEEHPE
LRTPDSPTQLVGGAGFATDFTSAEHLERMLSLDNVFSTEEFALWAGRVHAEVGNEVPFLC
ELKIDGVALALVYREGRLVRAATRGDGRTGEDVTNNARTIDDVPERLTPSDGYPIPDVLE
VRGEVFFRVADFEALNAALVEDGKTPFANPRNSAAGSLRQKDPAVTARRKLRMICHGVGY
TEGFRPATLHDAYLALGAWGLPVSEHTARVPNAAGALERIAYWGEHRHDVAHEIDGVVVK
IDDVALQRRLGSTSRAPRWAIAYKYPPQEVQTKLLDIRVNVGRTGRVTPFAFMTPVKVAG
STVGLATLHNAAEVKRKGVLIGDTVVIRKAGDVIPEVLGPIVDLRDGTEREFVMPTHCPE
CGTELAPAKEGDADIRCPNSRSCPAQLRERVFHVAGRGAFDIEGLGYEAAIALLQAGVIT
DEGDLFTLAEDDLLRTELFTTKAGTLSANGQRLLANLDKAKAQPLWRVLVALSIRHVGPT
AARALATEFGSLDAITSATTEQLAAVEGVGPTIAAAVTEWFTVDWHRAIVDKWRAAGVRM
ADERDVSTPRTLEGLTIVVTGSLTGFSRDDAKEAILARGGKAAGSVSKKTDYVVAGDAPG
SKYDKAVELGVPILDEDGFRRLLDAGPEVRPESQ
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgagttcgcccgaagctgatcccgtcccaccagagatccggcggcagtggcgggaactc
gccgacgaggtgcgcgaacaccagttccgctactacgtgcgtgatgcaccggtcatttcc
gacgccgatttcgaccagctgttgcgccggctggcggcgctcgaggaggagcatcccgag
ctgcgcactccggattcgcccacccagctggtcggcggtgccggctttgccaccgatttc
acctccgccgagcatctggaacggatgctgtcgctggacaacgtgttcagcaccgaggaa
ttcgccctgtgggcagggcgcgtccatgccgaggtgggtaacgaggtgccctttttgtgc
gagctcaagatcgacggggtggcgctggcgttggtctaccgcgagggccggctggtgcgg
gcggcgacccggggcgacggtcgcaccggcgaggacgtcaccaacaacgcgcgcaccatc
gacgacgtcccggaacggctgacgcccagcgacggctacccgattcccgacgtcctcgag
gtgcgcggcgaggtgttttttcgtgtcgccgacttcgaggcgctcaatgccgcgctggtc
gaagacggcaagacaccgttcgccaatccccgcaacagcgccgccgggtcgctgcgccag
aaggatcccgcggtgaccgcgcgccgcaaattgcgaatgatctgccacggagtgggatac
accgagggattccgtcccgccaccctgcacgacgcctatctggcgctcggtgcctggggc
ctgcccgtctccgaacacaccgcgcgggtgcccaacgccgccggcgcgctggagcggatc
gcctactggggcgagcaccgccacgacgtcgcccacgaaatcgacggtgttgtcgtcaag
atcgacgatgtcgcactccaacgccgactggggtcgacgtcgcgcgcaccgcgctgggcg
atcgcctacaagtacccgccgcaggaggtacagaccaagctgctcgacatccgggtcaac
gtcggccggaccgggcgcgtaacaccgttcgcattcatgacgccggtcaaggtcgccggc
tcgaccgtcgggttggccacgctgcacaacgcggccgaggtcaagcgcaagggcgtgctg
atcggcgacacggtggtgatccgcaaggccggcgatgtgattccggaggtgctcggaccc
atcgtcgatctgcgtgacggcaccgaacgcgaattcgtcatgcccacgcattgtcccgag
tgcggaaccgaactggctccggccaaggaaggcgacgccgacatccggtgcccgaactcc
cgatcctgcccagcgcagctgcgggagagggtgtttcacgtcgccggtcgcggcgccttc
gacatcgaaggcctgggctacgaggccgcgatcgcgctgctgcaggcgggggtgatcacc
gacgagggcgacctgttcaccctcgccgaggacgacttgctgcgcaccgagctgttcacc
accaaggccggcacgctttcggccaacgggcagcggctgctggccaacctggacaaggcc
aaggcccagccgctgtggcgggtgctggtggcgctgtcgatccggcatgtcggcccgacc
gcagcgcgcgcgctggccaccgagttcggcagtctcgacgccatcacctcggcaaccacc
gagcagctggccgcggtcgagggcgtcgggccgacgatcgccgccgcggtcaccgaatgg
ttcaccgtcgactggcaccgcgcgatcgtcgacaaatggcgggccgccggggtgcggatg
gccgacgagcgtgacgtgagcaccccacgcacgctcgaggggctgaccattgtcgtcact
gggtcgctgaccggcttttcccgcgacgacgccaaggaagcgatcctggcgcgcggcggc
aaggccgcgggttcggtgtcgaagaagaccgactacgttgtcgccggcgacgcgccgggc
tcgaagtacgacaaggcggtggagttgggcgtgccgatcctcgacgaagatgggtttcgg
cggttactggacgcgggaccggaggtgcgcccggaatcgcagtaa
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integrated database retrieval system
