Magnolia sinica: 131217283
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Entry
131217283 CDS
T09699
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
msin
Magnolia sinica
Pathway
msin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
131217283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msin03400
]
131217283
Enzymes [BR:
msin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
131217283
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
131217283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
131217283
NCBI-ProteinID:
XP_058068176
LinkDB
All DBs
Position
10:86102538..86128433
Genome browser
AA seq
1258 aa
AA seq
DB search
MSDATVRFSVLCSMFQAMVRNKTSALKRKHFRKFLDYVYSSRDYFSAVRLILPPLDRERG
SYGLKESVLATCLIDALGISRESEDALRLVNWRKAGSKVGVNAGNFALVAAEVLQRRQGT
ASGGLTIKELNDSLDRLASSENRGEKTSVLSDLIKKTNALEMKWIIMIILKDLKLGVSEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLKDRAQRHKRQDIEVGKPVRPQLALRVSDAATAW
KKLHGKQVVVECKFDGDRIQIHKNGTDIHFFSRNFIDHPEYGHSMSNLIIQNIMVDRCIL
DGEMLVWDTSANRFAEFGSNQEIAKAAKEGLQSDRQVCLYVAFDILYVGDTSVIHQSLKE
RHELLRKVVKPLKGRLEILVPNGGLNVHSPSGEPCWSLIAFNVEEVERFFKETIENRDEG
IVLKDLGSKWEPSDRSGKWLKLKPDYIRAGCDLDVLIIGGYFGSGRHGGEVAQFLVALAE
RATPNAYPKRFISFCRVGTGLSDDELDTLITKLKPYFRKNEHPKKAPSFYEVTNNSKERP
DVWIDSPEKSIILSITSDIRTIKSTVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVDLV
HSSNGNAQRGADLGGLPGHKSKPTKSSRKVEKKTVSVVPSHLTQTDVSGVKGATYIFTNM
MFYFVNVPPSYSLDSFHKMVAENGGAFSMNLNDSVTHCIAAEKKGIKYQATMLRGDIIHY
SWVLDCCSQKRLLPLQPKYFLFFAGSSKHKLQEEVDAFSDYYYCDLDITDLKQLFSNMDR
SGDPKRIHYYKKKYCPMEKWRLFQDCCVYFFHSMHSVADCKVLLELAMRRLKLEVSMYGG
EISNDLSCATHLVVFSVRESDVAFDMVLKSIPAEKRHFLHKKQLHVVGHQWLEDSLEKGK
KLQEDAYNLKPEGFEEADIEEQSVQPVEVETHLDNEEKELLSTSPNRDENRKRGRPANAN
AKRGRASFRPARKTRARHAPAKIDQNESENSFSSEERSRKEENKLKSGSIGYHGITVEEK
KSTDENERLGSYNNSCRIKTAKQKDTPGDERGRPTRANAKRGRVGLQPARRTRARHSNKP
AKIDQNESENGFSSEESSKKEETESKSGSVDHHGIATEEKKSTDENVLKRPGSSNNSHRI
ETTKQKDAQDDEDSEGSDNLQEIEAGENKAIQEVEKAGGSGNTHRIKEEDKGTTGKLELM
IDPVQAMLLDMIPTLNRNKAETEKPVVEDEKPMSLDENPLKKKKVSYKDVAGELLKDW
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgcgacggtcaggttcagcgtcctctgcagcatgttccaggccatggtcagg
aacaagacctcggccttgaagcggaagcatttccggaaattcctggactacgtctactcc
tcccgcgactatttcagtgccgtccgtctcatccttccacccctcgatcgggagcgcgga
tcctacggcctcaaggagtccgtactcgccacctgcctcatcgacgccctcggcatctcc
cgcgagtctgaagacgcccttcgcctcgtcaactggcggaaagctggctccaaggtcggc
gtcaatgcgggcaacttcgccctcgttgctgccgaggtgctacaacgccggcaagggaca
gcttctggtggattaaccatcaaggagttaaacgattcgcttgatcggttggcttccagt
gaaaataggggagaaaagacttctgttctttcggatctcatcaagaaaacaaatgcactg
gaaatgaagtggattattatgatcattctcaaagatttgaagctgggagttagcgaaaag
agcattttccatgaatttcatcctgacgctgaagacttgttcaatgtcacctgtgacttg
aaactagtttgtgaaaagctgaaggatcgagctcagcggcacaaaagacaggacatagaa
gtggggaaacctgtgcggcctcaactagctctgagagttagcgatgctgctactgcatgg
aagaagctccatggcaagcaagtggttgttgagtgcaaatttgatggcgaccgtattcaa
attcataagaatggaacagatatacactttttctcaaggaactttatcgatcaccctgag
tatggccattctatgtcaaaccttatcattcagaacatcatggttgacaggtgcatactt
gatggggaaatgttggtctgggacacatctgccaatcgttttgcagaatttggctcaaat
caagaaatagcaaaagcagctaaggagggcttgcagagcgatcgacaggtttgcctctat
gttgcttttgatattctttatgtaggagacacaagcgttattcatcaaagcttgaaggaa
cggcatgagcttcttcggaaagttgtcaagcctttgaagggtcgtttggaaattttagtg
cctaatggtggtcttaatgttcatagtccatcaggggaaccatgctggtctctcattgca
tttaatgtggaagaagttgaaagatttttcaaagaaaccatcgagaatagagatgaagga
attgtgctgaaagaccttggttctaagtgggaacctagtgatcggagtggaaagtggctg
aagttgaagcctgattacatacgtgctggttgtgatttggatgttttaatcataggagga
tactttggctcagggcgtcatggaggtgaggttgctcaatttttggtggctcttgcggag
cgggcaacccccaatgcctaccctaaacgatttatttcattttgtagagtgggcacggga
ctctctgatgatgagcttgatactctcattacaaaattgaaaccctatttcaggaaaaat
gagcacccgaagaaggcaccgagtttttatgaagttacaaataattcgaaggagaggccg
gatgtttggatcgatagccctgaaaaatcaattatactttccattacaagtgatattcga
acaataaagtcgacggtatttgctgcaccatacagtctaagatttcctcgcattgatcga
gtgagatatgacaaaccttggcatgagtgtcttgatgtgcaatcatttgtagacttggta
cattcaagcaatggtaatgcacaaaggggagcagatcttggagggttgccaggccacaaa
tcaaaacccactaagtcatcaagaaaagtagagaaaaagactgtttctgttgtcccttct
catctcacgcagactgatgtttcaggggtcaagggggcgacatacatcttcacaaacatg
atgttttacttcgtcaatgtgcctccatcctactctttagattctttccacaaaatggtg
gctgagaacgggggtgccttttcgatgaatctcaacgactcagttacgcattgcatagca
gcagagaaaaaaggcatcaaatatcaggctactatgcttcgtggagatataattcactac
tcttgggtcttggattgctgttcgcaaaaacgactcctgcctttgcaacccaagtacttc
ctcttcttcgcgggctcttcaaagcacaagctacaagaagaggttgatgcattctctgat
tattattactgtgatcttgatattacagatcttaaacagctcttcagcaacatggacaga
tcgggagaccccaaaagaattcactattataagaagaagtattgtccaatggaaaaatgg
cgtttgtttcaggactgttgtgtttacttcttccattcaatgcattcagttgcggactgc
aaagtcttattggagcttgccatgaggaggttgaaacttgaagtttcaatgtatggtggt
gaaatcagcaatgatctttcatgtgctactcatctggtggtcttttcagtaagggagtca
gatgtggcctttgatatggtactcaaaagtattccagccgaaaagagacactttctacat
aagaaacaattgcatgttgtggggcatcaatggctggaagattctttggagaagggtaag
aagttgcaggaggatgcatacaatttgaagcctgaaggctttgaagaagcagatattgaa
gaacaaagtgtacaacctgtagaggtcgagacccacttagataatgaagagaaggagcta
ttgtcgacatcacctaacagagatgaaaatcggaaaagaggtagacctgccaatgcaaat
gcgaaaagaggaagagccagttttcggccagctcgaaagacacgggcaaggcatgcacct
gctaaaatagaccaaaatgaatcagaaaacagcttttcctcagaagaaagaagtaggaag
gaagaaaacaaattaaaaagtgggtctattggttatcacgggatcacggtggaggaaaag
aagagtactgatgagaatgaaagactgggcagttacaataattcgtgtaggatcaaaaca
gccaaacagaaagataccccaggtgatgaaagaggcagacccacacgtgcaaatgcgaaa
agaggaagagttggtttgcaacctgctcgaagaacacgagcaaggcattcaaacaaacct
gctaaaatagaccaaaatgaatcagaaaacggtttttcctcagaagaaagcagtaagaaa
gaagaaaccgagtcaaaaagcgggtctgttgatcatcatgggatcgcaacagaggaaaag
aagagtactgatgagaacgttcttaaaagaccgggcagttccaataattcacataggatt
gaaacaacaaaacagaaagatgcccaagatgatgaagacagtgaagggtctgataatctg
caggagattgaagcaggggaaaataaggcaatccaagaggtggaaaaggctggagggtct
ggaaacacacacagaataaaagaagaagacaaaggtaccactggaaagcttgagctgatg
atcgatccagtccaagcaatgttgctggacatgatccctaccctcaaccggaacaaagct
gaaactgaaaaacctgttgttgaagatgagaagccaatgagtcttgacgaaaacccattg
aaaaagaaaaaggttagctacaaagatgttgcaggtgaattgctcaaggactggtaa
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