Magnolia sinica: 131224643
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Entry
131224643 CDS
T09699
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
msin
Magnolia sinica
Pathway
msin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131224643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msin03041
]
131224643
Spliceosome [BR:
msin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
131224643
Complex C
U5 SnRNP specific factors
131224643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
Roc
Septin
EF-G_D2
Ras
Motif
Other DBs
NCBI-GeneID:
131224643
NCBI-ProteinID:
XP_058075894
LinkDB
All DBs
Position
14:78566804..78579339
Genome browser
AA seq
989 aa
AA seq
DB search
MDDSLYDEFGNYIGPDIDSDHESDGDEEEDEDITDKPTEEAPGSDDEDGNAAANGWLTTS
NDVDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVRNIKFEVGVKD
SSTYVSTQFLLGLMSNPTLVRNVALIGNLQHGKTVFMDMLVEQTHHISTFDQNSEKHMRY
TDTRIDEQERRISIKAVPMSLVLEDSNAKSYLCNIMDTPGHVNFSDEMTAALRLADGAVL
IVDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPADAYHKLRNTLEVIND
LISSFSTTAGGIQTVDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGIPFDAAKFAKRLW
GDMYYHPDDRVFRKKPPMSGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLS
NAAYRLNVRPLLRLACSSVFGSATGFTDMLVEHIPSARDSAVRKIEHTYTGPQDSMIAEA
MKDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGTIQTGQTLRVLGEGYSPDDEEDMTV
KEVTKLWVYQARYRIPISKAPAGSWVLIEGVDASIMKTATLCPLDLDEEVYIFRPLRFNT
LPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGEIYLDSIMKDL
RELYSEVEVKVADPVVTFCETVVESSSMKCFAETPNKKNKITMLAEPLEKGLAEDIENGV
VSIDWPRKKLGEFFQTRYDWDLLAARSIWAFGPDKQGPNILLDDTLPSEVDKNLLNSVKD
SIVQGFQWGAREGPLCDEPIRNVKFKILDATIAPEPLHRGGGQIIPTARRVAYSAFLMAT
PRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPAYIVKAFLPVIESFGFE
TDLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMS
EDVSINKFFDEAMVAELALQAAELHQQMM
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggacgatagcttgtacgatgaattcggcaactacattggaccagacattgattcggat
catgaatctgatggggatgaggaagaggatgaagacatcactgataagcccacagaagaa
gcacctggctccgacgatgaggatggcaatgccgctgccaatgggtggttgaccacttca
aatgatgttgacatggataaccagattgttcttgctgaagacaaaaagtactaccctact
gccgaagaggtctatggcgaagacgttgaaacccttgtcatggatgaagacgaacaacct
cttgaacaaccaatcataaagcctgtgagaaacataaagtttgaggtgggcgtgaaggat
tcgtccacatacgtctcaacccaatttcttcttggtctaatgtcaaatcccaccctcgtt
cgcaatgttgcgttgattgggaacctccagcatggcaagactgttttcatggacatgctg
gtcgagcagacacaccacatctccacctttgatcaaaacagtgagaagcacatgaggtat
acggatacaaggattgacgagcaagagaggaggatttcgattaaggcagtgcccatgtct
ctagttctcgaagatagcaatgcaaaatcctatctttgtaatatcatggacactcctggc
cacgtaaatttctctgacgagatgactgctgcactcaggcttgctgatggcgctgtgtta
attgtggatgctgcagaaggagtaatggttaacaccgagagagccattcggcatgctatt
caggaacgacttcctattgtggttgtaatcaataaggttgacaggctgataacagaactt
aaactgccaccagctgatgcttatcacaagttaaggaatacattggaagtcatcaatgac
ctgatctcttcattctctaccacagcaggaggcatccaaacggttgacccagctgccgga
aatgtatgcttcgccagtgccagtgcagggtggtccttcaccctccaatcgtttgccaaa
ctctatgttaaacttcacggaattccatttgatgctgcaaagtttgctaaacgactctgg
ggagacatgtactatcaccccgatgaccgagttttcaggaagaaacccccaatgagtgga
ggcgaaagatcttttgtgcagtttgttctcgaacccctatacaagatatatagtcaagtc
atcggagaacataagaagagtgtggaggccactctagcagaacttggtgtcactcttagt
aatgcagcatatagactgaatgtcaggcctttactgaggctggcttgcagctcagttttc
gggtctgccactggcttcactgacatgttggttgagcacatcccttcggctagggattct
gcagttaggaagatagagcacacatacacagggcctcaagactcgatgattgccgaggct
atgaaagactgtgatccttctggcccactcatggttaatgtgaccaagctttatccaaag
tctgattgtagtgtttttgatgcttttggtagagtttatagtggtaccattcagacagga
cagacgttacgtgtactgggtgaaggttattcaccggatgatgaggaagacatgaccgtc
aaagaagttacgaagttgtgggtttatcaagctcggtaccgcattcctattagtaaggcg
ccggcaggttcctgggttcttattgaaggtgtggatgcttcgatcatgaagactgcgacc
ctttgtcccctggatttggacgaagaggtgtacatctttcggcctcttcgcttcaacact
ctgcctgttgtcaagacagcaactgaaccgttgaatcctagtgagttgccaaaaatggtc
gaaggtcttcgaaaaattagtaagagttatcctttggctattaccaaagtcgaggagtca
ggggagcacacaatattagggacaggggagatttatttggattctatcatgaaggatctt
agagagctctattctgaagtagaagtcaaggtggccgatccagttgtaacattttgtgag
acggtggtggagtcctcttcaatgaagtgctttgcggaaacacccaacaaaaagaataaa
attactatgcttgcagagccattggagaagggacttgcagaggatattgagaatggggta
gtgagcattgattggcctcgaaagaaactcggtgaattctttcagaccagatatgactgg
gacttacttgcggcacggtccatatgggcttttgggcctgataagcagggaccaaacata
ctgctagatgatactcttcccagcgaagtcgacaagaacttgctgaattctgtcaaggat
tctattgtacagggattccagtggggtgcccgagaaggacccctttgcgatgaacccatc
agaaatgtgaaattcaaaattctcgatgcgacaattgctcccgagcccttgcatcggggt
ggtggtcagatcattcccacagctcggcgggtggcttattcagctttcctcatggcaacc
ccgcggctaatggaacctgtatactatgtagagattcaaaccccaatagattgcgtctct
gcaatctacacagtcttatctcgtagacgtgggcatgtgacagctgatgttccgaagccg
ggcacccctgcttatattgttaaggcatttttaccggtgatagaatcgtttggttttgag
acggacttgcgataccatactcaggggcaggcattttgcctctcggtgtttgatcactgg
gccattgttcctggtgaccctctagacaaaagcatagtcctccggccccttgaacctgct
cccatccaacaccttgcccgtgagttcatggtgaaaacaaggcgtcggaagggtatgagc
gaggatgtaagcatcaacaagttcttcgacgaggctatggttgccgagcttgcgttgcag
gctgctgagcttcatcagcagatgatgtaa
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