Methylocella silvestris: Msil_3499
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Entry
Msil_3499 CDS
T00802
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msl
Methylocella silvestris
Pathway
msl03030
DNA replication
msl03410
Base excision repair
msl03420
Nucleotide excision repair
msl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Msil_3499
03410 Base excision repair
Msil_3499
03420 Nucleotide excision repair
Msil_3499
03430 Mismatch repair
Msil_3499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msl03032
]
Msil_3499
03400 DNA repair and recombination proteins [BR:
msl03400
]
Msil_3499
Enzymes [BR:
msl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Msil_3499
DNA replication proteins [BR:
msl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Msil_3499
DNA repair and recombination proteins [BR:
msl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Msil_3499
NER (nucleotide excision repair)
GGR (global genome repair) factors
Msil_3499
MMR (mismatch excision repair)
DNA ligase
Msil_3499
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Msil_3499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
ACK52388
UniProt:
B8ETN6
LinkDB
All DBs
Position
3843127..3845229
Genome browser
AA seq
700 aa
AA seq
DB search
MSAKPIDAMTLAQARREHSRLGAEIAAHDARYYREDAPTVSDAEYDRLRRRYGELESAFP
ELASPDSLTKKVGAAPSEKFAKIRHRIPMLSLGNVFSEAEVEDFVARVRRFLGLPTEASL
AITAEPKIDGLSCSLRFENGEFVQAATRGDGFEGEDVTANVRTIAEIPARLKGEPPEVLE
VRGEVYMTHADFAAMNVRQQEAGKPLFANPRNAAAGSLRQLDPNITAGRPLHFFAYAWGE
ILPAPPAGTQMGMVAAFKSYGLPVNPLMVLCHSAEELIAKYRSIEEKRAALGYDIDGVVY
KVDSLVLQERLGFVSRSPRWAVAHKFPAEQATTVLRDIEIQVGRTGALTPVARLDPVTVG
GVTVANATLHNEDEIARKDVRIGDTVRIQRAGDVIPQVLGVVLNKRPAEAKPYVFPDHCP
ICGSAAIREIDEKTGVADVVRRCTGGLICPAQAIERLKHFASRNALDIEGLGDKQIEQFY
HDGLITKPADIFTLEARDKAALKKLKDREGYGETSTRNLFRAIEQRRAPALNRFIYALGI
RHVGETNARRLARHFGSFSALRETGRAAAPGSEARAEINNIEGVGEVVAEAVADFFAEPH
NEEALDALLAHVNPQPMEEIVSDTPVAGKTVVFTGALERMTRDEAKAMAERLGAKVAASV
SKKTDLVIAGPGAGSKLAKAAELGVETISEEDWLKLVGRA
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaaaacctattgacgcgatgacgcttgcgcaggcgcgccgcgaacattcgcgg
ctcggcgccgagatcgccgcgcatgatgcgcgctattatcgcgaggacgcgccgacggtt
tccgacgcggaatatgatcggctgcgccgccgctacggcgaactggagagcgcctttccc
gaactcgcgagcccggattcgctcaccaaaaaagtcggcgccgcgccatcggaaaaattc
gcgaaaatccgccacaggattccgatgctctcgctcggcaatgtgttcagcgaggcggaa
gtcgaggattttgtcgcgcgggtccggcgctttcttggcctccccaccgaggcgtcgctg
gcgatcaccgccgagccgaaaatcgacgggctttcctgctcgctgcgcttcgagaacggc
gaatttgtccaggcggcgacgcgcggcgacggttttgagggcgaggacgtcaccgccaat
gtgcggaccatcgcggagatccccgcgcgtctcaagggggagccgcccgaagtcctcgaa
gtgcgcggcgaagtctatatgacccacgctgatttcgccgcgatgaatgttcgccagcag
gaggcgggcaagccgctgttcgccaatccgcgcaacgccgcggccggctcgctgcgccag
ctcgatccaaatatcaccgccggccggccgctgcatttcttcgcctatgcctggggcgag
attttgcccgcgccgccggccggcacgcaaatgggcatggtcgccgcgttcaaatcctac
gggctcccggtcaatccgctgatggtcctttgccattcggcggaagaactcatcgcgaaa
taccgctcgatcgaggagaagcgcgccgcgctcggctatgacatcgacggcgtggtgtac
aaggttgattctcttgtgcttcaggagcggcttggctttgtttcgcgctcgccgcgctgg
gccgtggcgcataaatttccggccgaacaggcgacgacggttttgcgcgatatcgaaatc
caggtcggccgcaccggcgcgctgacgcccgtggcgcggctcgatcccgtgaccgtcggc
ggcgtcaccgtcgccaacgccacgctgcacaatgaggacgagatcgcgcgcaaggacgtc
cgcatcggcgacacggtcaggatccagcgcgcgggcgacgtcattccgcaggtgctgggc
gtcgttctgaacaaacgcccggccgaggcgaagccttatgtgtttccggatcattgtccg
atctgcggctcggccgcgatccgcgagatcgacgaaaaaaccggcgtcgccgatgtcgtg
cgccgctgcaccggcggcctcatttgcccggcgcaggcgatcgagcgactgaaacacttc
gcctcgcgcaatgcgctcgatatcgaagggctgggcgacaagcagatcgagcagttttat
catgacgggctgatcacgaagcccgcggatatttttacgctcgaagcgcgcgacaaagcc
gcgctgaaaaagctgaaggaccgcgagggctatggcgaaacctcgacccgcaatctgttt
cgggcgatcgaacagcgccgcgcgccggccttgaaccgctttatctatgcgcttggaatc
cgccatgtcggcgaaaccaatgcgcgccggctcgcccgccatttcggctccttttcggcg
ctgcgggagactggccgcgccgcggcgcccggctcggaggcgcgcgccgagatcaataat
atcgagggggtaggggaagtcgtcgccgaggcggtcgccgatttttttgccgagccgcac
aacgaggaggcgctcgatgcgctgctcgcccatgtgaacccgcagccgatggaggagatc
gtctcggatactcccgtcgccggcaagaccgtggtgtttaccggcgcgctggagcgcatg
acgcgcgacgaggccaaggccatggccgagcgtttaggcgccaaggtggcggcctcggtg
tcgaagaagaccgacctcgtgatcgccgggccgggggcggggtcaaaactcgccaaggcg
gcggagctcggggtggagacgatcagcgaagaggactggctgaagctggtggggcgggca
tag
DBGET
integrated database retrieval system
