Mycolicibacterium gilvum Spyr1: Mspyr1_35940
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Entry
Mspyr1_35940 CDS
T01376
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msp
Mycolicibacterium gilvum Spyr1
Pathway
msp03030
DNA replication
msp03410
Base excision repair
msp03420
Nucleotide excision repair
msp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Mspyr1_35940
03410 Base excision repair
Mspyr1_35940
03420 Nucleotide excision repair
Mspyr1_35940
03430 Mismatch repair
Mspyr1_35940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msp03032
]
Mspyr1_35940
03400 DNA repair and recombination proteins [BR:
msp03400
]
Mspyr1_35940
Enzymes [BR:
msp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Mspyr1_35940
DNA replication proteins [BR:
msp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Mspyr1_35940
DNA repair and recombination proteins [BR:
msp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Mspyr1_35940
NER (nucleotide excision repair)
GGR (global genome repair) factors
Mspyr1_35940
MMR (mismatch excision repair)
DNA ligase
Mspyr1_35940
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Mspyr1_35940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ADU00203
UniProt:
E6TID2
LinkDB
All DBs
Position
complement(3716521..3718626)
Genome browser
AA seq
701 aa
AA seq
DB search
MLAEQAHDALDPDLRRSWQELADEVREHQFRYYIRDAPIITDAEFDQLLRRLQALEDEYP
ELRTPDSPTQLVGGAGFATDFTAAEHLERMLSLDNVFDLEELAAWAARIRTEIGADAQYL
CELKIDGVALALVYRDGRLERAATRGDGRTGEDVTLNARTIEDIPERLSGTNEFPLPTVL
EVRGEVFFRVADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMICHGLG
HVESSGGSPFPTLHDAYRALKAWGLPVSDHTAQVTGLDAVTERIAYWGEHRHDVEHEIDG
VVVKVDAVALQRRLGATSRAPRWAVAYKYPPEEAQTRLLDIRVNVGRTGRVTPFAYMEPV
KVAGSTVGLATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVFPT
HCPECGSELAPAKEGDADIRCPNTRSCPAQLRERVFHVAGRGAFDIEGLGYEAATALLQS
GVIADEGDLFGLTADDLLRTELFTTKAGELSANGKRLLANLGKAKAQPLWRVLVALSIRH
VGPTAARALATEFGSLEAIETASEEQLAGTEGVGPTIAAAVIDWFTVDWHRAIVDKWREA
GVRMADERDASIERTLEGLSIVVTGSLAGFSRDEAKEAIIARGGKAAGSVSKKTAYVVAG
DAPGSKYDKAIELGVPVLDEDGFRRLLAEGPERDAEDGEPG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgctggccgagcaagcccacgatgcgctcgaccccgacctgcgccgcagttggcaggag
ctcgccgacgaggtccgtgaacatcagttccgctactacatccgcgacgccccgatcatc
accgacgccgaattcgaccaactgctgcgccggctacaggcgctcgaagacgagtatccg
gagctgcgcacgcccgactcgccgacccagctcgtcggcggggccgggttcgccaccgac
ttcaccgccgccgaacacctcgagcgcatgctcagcctggacaacgtgttcgacctcgag
gaactggccgcgtgggccgcacggatcaggaccgagatcggcgcggacgcgcagtacctg
tgcgagctcaagatcgacggtgtcgcgctggctctcgtctaccgcgacggacggctggag
cgggcggcgacacggggggacggacgtaccggcgaggacgtcacgctcaacgcccgcaca
atcgaagacatccctgaaaggctcagcggcacaaatgaattcccgttgcccaccgttctg
gaggtgcgtggcgaggtcttcttccgggtcgccgacttcgaagacctgaacgccgggctg
gtcgccgagggcaagccgccgttcgccaacccgcgcaacagcgccgccggttcgctgcgc
cagaagaacccggccgtcacggcgcgccgccggttgcggatgatctgccacggactgggg
catgtggagtcctccggaggttccccgttcccgacgctgcacgacgcctaccgcgcactc
aaggcgtgggggctgccggtttccgaccacaccgcccaggtcaccgggctcgacgcggtc
accgagcgcatcgcctactggggtgagcaccgccatgacgtcgaacacgaaatcgacggc
gtggtggtcaaagtcgatgccgtggcgctgcaacgccgcctcggcgcgacctcgcgcgca
ccgcggtgggcggtcgcctacaagtatccgcccgaagaggcccagaccagactgctcgac
atccgggtcaacgtcgggcgcacaggacgggtgacgcccttcgcctacatggagccggtc
aaggtggccggttcgacggtcgggctggccacgctgcacaacgcgtcggaggtcaaacgc
aaaggtgtgctgatcggcgacaccgtcgtcatccgcaaggcgggcgacgtcatccccgag
gtactgggacccgtcgtggacctacgcgacggcagtgagcgcgaattcgtcttcccgacc
cactgtccggagtgcggaagcgagctggcccccgccaaggagggcgacgccgacatccgc
tgcccgaacacgcgcagttgcccggcgcagttgcgggagagggtgtttcacgtcgccggt
cggggggccttcgacatcgaggggctcggctacgaggcggcgacggcgctgctgcagtcc
ggcgtcatcgccgatgagggtgacctgttcgggctcaccgcggacgacctgctgcgcacc
gagttgttcaccaccaaggccggtgagctgtcggccaacggcaagcggctgctggccaac
ctgggcaaggccaaggcgcaaccgttgtggcgcgtgctggtcgcactgtcgatccggcac
gtgggcccgaccgcggcccgcgcgctggccaccgagttcggcagcctggaggccatcgag
accgcgtcggaggaacagctcgccggcaccgaaggcgtcgggccgacgatcgcggcggcg
gtcatcgactggttcaccgtcgactggcaccgcgcgatcgtcgacaagtggcgcgaggcc
ggggtccggatggccgatgaacgcgacgccagcatcgaacgcacgctggaggggctctcg
atcgtcgtgaccggatcgctggccggcttcagcagggacgaggccaaggaggcgatcatc
gcgcgcggcggcaaggcggccggttcggtgtcgaagaagaccgcgtacgtcgtcgccggc
gacgcgccgggatccaagtacgacaaggcgatcgaactgggcgtacccgtcctcgacgag
gacgggttccgtcgactgctcgcagaaggtccggagcgcgacgccgaggacggcgagcca
ggctag
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