Mycobacterium spongiae: F6B93_06860
Help
Entry
F6B93_06860 CDS
T07689
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mspg
Mycobacterium spongiae
Pathway
mspg03030
DNA replication
mspg03410
Base excision repair
mspg03420
Nucleotide excision repair
mspg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mspg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F6B93_06860 (ligA)
03410 Base excision repair
F6B93_06860 (ligA)
03420 Nucleotide excision repair
F6B93_06860 (ligA)
03430 Mismatch repair
F6B93_06860 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mspg03032
]
F6B93_06860 (ligA)
03400 DNA repair and recombination proteins [BR:
mspg03400
]
F6B93_06860 (ligA)
Enzymes [BR:
mspg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F6B93_06860 (ligA)
DNA replication proteins [BR:
mspg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F6B93_06860 (ligA)
DNA repair and recombination proteins [BR:
mspg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F6B93_06860 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F6B93_06860 (ligA)
MMR (mismatch excision repair)
DNA ligase
F6B93_06860 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F6B93_06860 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QUR66847
UniProt:
A0A975JW99
LinkDB
All DBs
Position
1673924..1676023
Genome browser
AA seq
699 aa
AA seq
DB search
MSVADADPTPPAVLRQWRDLAEQVREHQFRYYVRDAPIITDAEFDVLLRGLQELEEQHPE
LRTPDSPTQLVGGAGFATDFEQVDHLERMLSLDNAFSTDELVAWAARVHGEIGETSAAAV
HYLCELKIDGVALSLVYRGGRLTRASTRGDGRTGEDVTLNARTIDDVPERLTASDGYPIP
DVLEVRGEVFFRLADFQALNASLVEAGKPPFANPRNSAAGSLRQKDPAVTARRKLRMICH
GLGYTEGFHPETQHDAYLALRAWGLPVSEHTTVVPDMSGVQERVDYWGEHRHEVDHEIDG
VVVKVDEVALQRRLGATSRAPRWAIAYKYPPEEAQTTLLDIRVNVGRTGRITPYALMTPV
RVAGSTVGQATLHNASEVKRKGVLVGDTVVIRKAGDVIPEVLGPVVDLRDGSQREFVMPT
TCPECGTSLAPEKEGDADIRCPNARSCPGQLRERVFHVASRNALDIEVLGYEAGVALLEA
QAIADEGDLFGLGKEDLLRTDLFRTKAATLSANGQRLLANLDKAKEAPLWRVLVALSIRH
VGPTAARALATEFGGIDAIFSASTEQLAAVEGVGSTIAAAVTEWFTVDWHREIVDKWRAA
GVRMADERDESVPRTLTGLTIVVTGSLAGFSRDDAKEAILARGGKAAGSVSKKTSYVVAG
DAPGSKYDKAVELGVPILDEEGFRALLADGPDTEQASVT
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgtggctgacgctgaccccaccccgcccgcggtgttgcggcagtggcgggacttg
gccgagcaagtgcgcgaacaccagttccgctactacgtgcgcgacgccccgatcatcact
gatgcggagttcgatgtccttctgcgcggcctgcaagaactcgaggagcagcaccccgag
ctgcgcacgcccgactcgcccacccagttggtcggcggcgccggcttcgccaccgatttc
gagcaggtcgaccatctcgaaagaatgctcagcctcgacaacgcgttcagcacggatgaa
ctcgtcgcctgggccgcccgagttcacggcgagatcggggagaccagcgccgcggccgtg
cactacttgtgcgagctgaagattgacggtgtcgcactgtcgttggtctaccgtggtgga
cggctgacccgcgcgtcgacgcggggtgatggtcgcacgggcgaggatgtgaccctcaat
gcccggaccattgatgacgttcccgaacggctcaccgccagcgacggctacccgataccc
gacgtcctcgaagttcgcggcgaggtgttcttccggctcgccgactttcaggcccttaac
gccagcctcgtcgaggccggtaagccgccgttcgccaatcctcgcaacagcgcggccgga
tcgttgcgccaaaaggatccggcggtcactgcccgccgcaagctgcggatgatctgccac
gggctggggtatacggaggggtttcacccagaaacccagcacgacgcctatctggcgttg
cgggcttgggggctgcccgtttccgagcacaccaccgttgtgcccgacatgagtggtgtg
caggagcgggtcgactactggggtgagcaccgccacgaggtggaccacgaaatcgacggg
gtagtggtcaaggttgacgaagtggcgctgcagcgcaggctgggggccacgtcgcgagct
ccccgctgggcgatcgcctacaagtacccgcccgaggaagcgcagaccacgctgctcgac
atccgggtgaacgtgggtcgcaccggacgtattaccccgtacgcgttgatgacaccggta
agagtcgcggggtcgacggtgggacaggccacgctgcacaacgcgtcggaggtcaagcgc
aaaggcgtgttggtcggcgacacggtggtgattcgcaaagccggtgacgtgatccccgag
gtgctcgggcccgtggtcgacctgcgcgatgggtcgcaacgcgaattcgtcatgcccaca
acatgtcccgagtgcggtacgagtctggcgccggaaaaagagggcgatgccgacatccgg
tgcccgaacgcgcgcagttgtccggggcaactgcgggagcgggtatttcatgtagccagc
cgcaacgccctggacatcgaggtgctgggctacgaggccggcgtcgcgctgctggaagcg
caggctatcgctgatgaaggcgatctgttcggtcttgggaaagaagacctattgcgcacc
gatctttttcggaccaaggccgcgacattgtccgccaatggccagcggttgctggccaac
ctcgacaaggccaaggaggctccgctgtggcgagtgctggtggcgttgtcgatccgacac
gtcgggccgacggcggcgcgagccctggcgaccgaattcggcggcatcgacgccattttt
tccgcctccaccgaacagctggccgcggtcgagggcgtgggatccaccatcgccgccgct
gtcacggagtggttcaccgttgactggcaccgcgagatcgtggacaagtggcgggcggcc
ggggtgcggatggccgacgagcgagacgagagcgtgccgcgcaccctgaccgggctgacc
atcgtggttaccgggtcgttggcgggtttctcccgcgacgatgccaaggaagcgatcctt
gcccgcggtggcaaggccgctggctcagtgtcgaagaagaccagctacgtcgtcgccggc
gatgcgcccggatcgaaatacgacaaagccgttgagctcggggtgccgatccttgatgaa
gaagggttccgcgcgctgttggccgacggaccggacaccgagcaggccagcgtgacatag
DBGET
integrated database retrieval system
