Microbulbifer spongiae: M8T91_06075
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Entry
M8T91_06075 CDS
T10475
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mspn Microbulbifer spongiae
Pathway
mspn03030
DNA replication
mspn03410
Base excision repair
mspn03420
Nucleotide excision repair
mspn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mspn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M8T91_06075 (ligA)
03410 Base excision repair
M8T91_06075 (ligA)
03420 Nucleotide excision repair
M8T91_06075 (ligA)
03430 Mismatch repair
M8T91_06075 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mspn03032
]
M8T91_06075 (ligA)
03400 DNA repair and recombination proteins [BR:
mspn03400
]
M8T91_06075 (ligA)
Enzymes [BR:
mspn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M8T91_06075 (ligA)
DNA replication proteins [BR:
mspn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M8T91_06075 (ligA)
DNA repair and recombination proteins [BR:
mspn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M8T91_06075 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M8T91_06075 (ligA)
MMR (mismatch excision repair)
DNA ligase
M8T91_06075 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M8T91_06075 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Zn_ribbon_NUD
AphA_like
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WKD50984
LinkDB
All DBs
Position
1437892..1439943
Genome browser
AA seq
683 aa
AA seq
DB search
MSNRTIPRVARARVQALREILQQANYQYYVLDDPDLPDVEYDRRLRELQDIEREYPELQT
SDSPTQRVGAEPLASFAQVHHEVQMLSLENAFSDEELLEFDRRVSERLNSTVPIEYACEP
KLDGIAISLLYRDGVLKRAATRGDGTTGEDITQNVRTVGSVPLRLRQDTGIAKYPRVLEV
RGEIYMPKAGFAELNRKAATTGEKLFVNPRNAAAGSLRQLDSRITAQRPLELCAYGTGLV
EGVSLPEEHMETLQLLGQWGFRLNREMRVVTGIRACIDYYNALGEKRDTLPYDIDGIVFK
VNSISLQKRLGFVARAPRWAVAYKFPAEEEMTELLDVEFQVGRTGAVTPVARLRPVFVGG
VTVSNATLHNRDEIQRLGVRIGDTVVIRRAGDVIPQVVSVVESKRPRNARPIVFPTHCPV
CGSPVESAPGEAVARCSGGLICSAQRKQAIKHFASRKAMDIDGLGDKLVEQLVDEGLLHS
VSGLYHLNLEQVAGLERMGQKSAQNLLNALEHSKETSLAKFLYALGIREVGEATARNLAR
HFGDLEVLMHADDEALQEVEDVGPVVAHFVAEFFQQPHALEEIEALRQAGVHWRVEERGG
EEQPLSGQTWVLTGKLETLSRSEAKDYLQHLGAKVAGSVSAKTDTVVAGPGAGSKLNRAR
ELDIPVMDEEALLEMLRQRGFDL
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatcgaactattccccgcgttgcgcgcgcccgggttcaggcactgcgagaaatc
cttcaacaggccaactatcagtactatgtgctggatgatccggatctgccggatgtggag
tatgaccgccgattgcgtgaattgcaggatatcgagcgggaatacccggaactgcaaacc
tccgactcgcccactcagcgtgtcggtgccgagccgctggcctcttttgcccaggtgcac
cacgaggtgcagatgctatcgctggagaatgcctttagcgatgaagagctattggagttc
gaccgtcgcgtgagtgagcgcctgaacagcacagtgccaatcgaatatgcctgcgaacct
aaactggatggcattgcgatcagcctgctgtatcgcgatggggttctcaagcgtgcggct
acccgtggcgatggcacaactggagaagatattacccagaatgtacgcactgtgggttcg
gtgcccctgcgtctgcggcaggatacaggcatagcgaaatacccccgcgtgctggaggtg
cgcggtgagatttatatgccgaaagcggggtttgccgaattgaaccgcaaggccgcaacc
accggcgaaaaactgttcgtcaatccccgcaacgcagccgccggcagtctgcgccagttg
gactcccgtatcactgcacagagacccctggagctctgtgcctatggcaccggccttgtg
gaaggcgtatccctgccggaagagcacatggaaaccctgcaactgcttgggcagtggggt
tttcgtctcaacagggaaatgcgtgtggtcactggtatccgcgcctgtatcgactattac
aatgcgctcggggaaaagcgcgatacgctgccctacgatatcgacggtattgtttttaaa
gtcaacagcatttctctgcaaaagcgcctgggttttgtcgcgcgggcaccgcgctgggcc
gtggcctacaaattccccgcggaagaggaaatgaccgagcttttggatgtggagttccag
gtggggcgcaccggcgcagtaaccccggtggccaggctcaggccggtgtttgttggcggc
gtgacagtgtccaatgcaaccttgcacaaccgtgatgaaatccagcgccttggagtcagg
atcggtgatacggtggtgattcggcgcgccggcgatgtgatcccccaagtggtctcggtg
gtggaaagcaagcgcccacgcaatgcccgtcccattgtatttccgacccactgtccggtc
tgcggctcgccggtggagtcggcaccaggagaggcggtggcccgttgcagtggcggtctg
atttgcagtgcccagcgcaagcaggcgatcaaacatttcgcttcacgcaaggcgatggac
atcgacggtctgggagacaagctggtggagcagttggtggatgaagggcttctgcactcg
gtttccggcctttatcacttgaatctagagcaggtggcagggcttgagcgcatggggcaa
aagtctgcacagaacctgctcaatgcgctggaacacagtaaagagacctccctggcgaag
ttcctctatgcactcggcatccgcgaggtgggagaggcgacagcgcggaacctggcccgg
cattttggtgacctggaagtattgatgcacgcggacgatgaggccttgcaggaagtggag
gatgtgggcccggtcgttgcccacttcgttgcagaattttttcaacagccccacgctctg
gaggaaatagaggccttgcgccaggcaggcgtgcactggcgggtggaggagcgcggaggg
gaagaacagcctttatccgggcagacctgggtgctgaccggcaagctggaaaccctgtcc
cgcagtgaagccaaggattatttgcaacaccttggtgcgaaggtggccggtagcgtctcc
gccaaaaccgatactgtcgtagccggaccgggtgcagggtcgaaactgaacagggcgcgt
gagctggatattccggtgatggatgaagaggcgttgttggaaatgctgcgccagcgcggg
tttgatctttag
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