Marinobacter salinus: BKP64_06650
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Entry
BKP64_06650 CDS
T04766
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msq
Marinobacter salinus
Pathway
msq03030
DNA replication
msq03410
Base excision repair
msq03420
Nucleotide excision repair
msq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BKP64_06650 (ligA)
03410 Base excision repair
BKP64_06650 (ligA)
03420 Nucleotide excision repair
BKP64_06650 (ligA)
03430 Mismatch repair
BKP64_06650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msq03032
]
BKP64_06650 (ligA)
03400 DNA repair and recombination proteins [BR:
msq03400
]
BKP64_06650 (ligA)
Enzymes [BR:
msq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BKP64_06650 (ligA)
DNA replication proteins [BR:
msq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BKP64_06650 (ligA)
DNA repair and recombination proteins [BR:
msq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BKP64_06650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BKP64_06650 (ligA)
MMR (mismatch excision repair)
DNA ligase
BKP64_06650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BKP64_06650 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AOY87873
UniProt:
A0A1D9GJR6
LinkDB
All DBs
Position
complement(1458268..1460304)
Genome browser
AA seq
678 aa
AA seq
DB search
MSKATPDVIQRVEELRSAVDDHNYRYYVLDDPQVPDSEYDRLFRELQKLEAEYPELASDD
SPTRRVGSSAETSFEEVVHRLPMLSLDNAFSEEELRDFDRRIRDRLGSGDDIEYVCEPKL
DGLAVSLHYENGSLTVAATRGDGYSGEDITANIRTIPSVPLKLRGKDVPELVEVRGEVYM
PKAGFEKLNRRLADQGEKTFVNPRNAAAGSLRQKKSTVTARRPLEMCAYSVAVTDESQLP
ETHFDGLQMVKRWGFRINPEMRKAKGVEECLTAYNQLMEKRESLPYEIDGIVFKVNRLSL
QQRLGFVSRAPRWAIAQKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNA
TLHNMDEIRRLDVRIGDTVFIRRAGDVIPQVVKVVTEKRPDDARAVELPEKCPVCDSDVV
QIEGEAVARCSGGLFCPAQRKEAIRHYASRKAMDIEGLGDKWIDILVDRGLVETVADLYH
LKKDDLTGLERMGEKSASNLVGAIDNARNPVLWRFLYALGIREVGEATAKGLAAHFGTLE
AIAGADEEALQTVPDVGPIVAGHIRSFFDQSHNKETLDALRQAGVVWQEEEIVEGEKPLQ
GQTWVLTGALSAMTRDEAKERLEQLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLEIPV
LDEAGLLDFLKQHGFGAP
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagccacgcccgacgttattcagcgtgttgaggaactccggtcagcggtcgac
gatcacaactatcgttattatgtactggacgatccgcaagtgccggattctgagtacgac
cgcctgttccgggaactccagaaactggaagcagagtaccctgaactggcttccgatgac
tctcccactcgccgggtgggtagcagcgcggaaacgagcttcgaggaagtggttcaccgc
ttaccgatgctttctctggataatgctttcagcgaggaagaactccgggatttcgaccgc
cggattcgggatcggctgggctcaggcgatgatatcgagtatgtgtgcgaacccaaactg
gatggcctggcggtgagtctgcattatgaaaacggctcgctgaccgttgcggctacccgt
ggtgatgggtactcgggcgaagatataaccgccaacatccgaacgatcccctcggtcccg
ctcaaacttcgtggcaaggatgtgccagagcttgttgaggtgaggggagaggtttatatg
ccgaaggcggggtttgaaaaactcaaccggcgtttggcggaccagggtgaaaagaccttt
gtcaatccccggaacgcggcagcaggcagcctgcggcagaaaaagtccacagtcacagcc
cggcgtccactggaaatgtgtgcttacagtgttgctgtgacggatgaaagccaactgccc
gagacccattttgatggtcttcagatggtgaagcgctggggtttcaggatcaatccggag
atgcggaaggcgaagggcgttgaagagtgcctgactgcctataaccagctaatggaaaag
cgcgaatctctgccctatgaaatcgacggcattgtcttcaaggtgaaccgcctgtctctt
cagcagcgactgggctttgtgtcgcgggctccgcgttgggcaatcgcccaaaagtttcct
gcccaggaagaactcacggtcattgaggatgttgagtttcaggttggtcgtaccggcgca
gtgacgcccgtggcccgtctcaagccggtatttgtcggtggtgtaaccgtcagtaatgcc
acgcttcataatatggatgagattcgccggctggatgtccgtattggcgatacggtgttc
atccggcgggcgggggacgtcattcctcaggtggtcaaggtggtgaccgagaagcgtccc
gacgatgccagggcggtggagcttccggaaaagtgcccggtatgtgattccgatgttgtt
cagattgagggagaggccgttgcccgctgctccggcgggctgttctgccccgcccagaga
aaggaagctatccgccactatgcgtcccgcaaagccatggacattgagggtctgggggac
aagtggatagatattctggtcgaccgtgggctggttgaaacggtcgctgacctgtaccac
ctgaaaaaagacgacctgaccggtcttgagagaatgggggagaaatcggcatccaatctc
gtaggggccatcgacaacgcccgaaacccggtgctgtggcgttttctctatgccctgggt
atcagggaggtgggcgaggcaacggccaaggggctggcggctcactttggcactcttgag
gccattgccggggcggatgaagaggccctacaaacagttccggatgttggcccgattgtg
gcgggacatatccgcagttttttcgaccagtcgcacaacaaggagacccttgatgccctg
cgacaggccggggtggtgtggcaggaagaagagattgtcgagggtgagaagcccctgcaa
gggcagacctgggtcctcaccggagcactgtctgccatgacccgtgatgaggcgaaagaa
aggcttgagcagcttggtgccaaggttgcgggtagtgtttcaaaaaagacggcgtgcgtg
gttgccggtgaggcggccggctccaagctggccaaggcagagcagcttgagattcccgtt
ctggatgaagccggtctcttggattttctcaaacagcatggtttcggcgctccgtaa
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