Mycobacterium stomatepiae: MSTO_19160
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Entry
MSTO_19160 CDS
T07145
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msto
Mycobacterium stomatepiae
Pathway
msto03030
DNA replication
msto03410
Base excision repair
msto03420
Nucleotide excision repair
msto03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSTO_19160 (ligA)
03410 Base excision repair
MSTO_19160 (ligA)
03420 Nucleotide excision repair
MSTO_19160 (ligA)
03430 Mismatch repair
MSTO_19160 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msto03032
]
MSTO_19160 (ligA)
03400 DNA repair and recombination proteins [BR:
msto03400
]
MSTO_19160 (ligA)
Enzymes [BR:
msto01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MSTO_19160 (ligA)
DNA replication proteins [BR:
msto03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MSTO_19160 (ligA)
DNA repair and recombination proteins [BR:
msto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MSTO_19160 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSTO_19160 (ligA)
MMR (mismatch excision repair)
DNA ligase
MSTO_19160 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MSTO_19160 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
ARMT1-like_dom
Motif
Other DBs
NCBI-ProteinID:
BBY21711
UniProt:
A0A7I7Q6G5
LinkDB
All DBs
Position
complement(1939047..1941131)
Genome browser
AA seq
694 aa
AA seq
DB search
MSSPEADPVPPEVRRQWRELADEVREHQFRYYVRDAPIISDADFDELLRRLAELEEQHPE
LRTPDSPTQLVGGAGFATDFTSAEHLERMLSLDNVFSTEEFDVWSARIHAEVGNDVPFLC
ELKIDGVALALVYRGGRLVRAATRGDGRTGEDVTNNARTIDDVPERLTASDQYPIPDVLE
VRGEVFFRVADFEALNAALVEDGKVPFANPRNSAAGSLRQKDPAVTARRKLRMICHGVGR
TEGFRPVSLHDAYLALGAWGLPVSDHTTRVDNAAGALERIAYWGEHRHDVDHEIDGVVVK
IDDVGLQRRLGSTSRAPRWAIAYKYPPQEVQTQLLDIKVNVGRTGRVTPYAVMVPVKVAG
STVEMATLHNASEVKRKGVLIGDNVVLRKAGDVIPEVLGPVADLRDGTEREFVMPTHCPE
CATLLAPAKEGDADIRCPNSRSCPAQLRERVFHVAGRGAFDIEGLGYEAAIALLAAEVIT
DEGDLFTLAEDDLLRTELFTTKAGTLSANGKRLLANLDRAKAQPLWRVLVALSIRHVGPT
AARALATEFGSLDAITSASTDELAAVEGVGPTIAAAVTEWFMVDWHRAIVDKWRAAGVRM
ADERDASTPRTLAGLSIVVTGSLNGFSRDEAKEAIVSRGGKAAGSVSKNTAYVVAGDSPG
SKYDKAVELGVPILDEDGFRRLLAEGPASGGTAD
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgagttcgccagaagctgaccccgtcccacccgaggttcgccggcaatggcgcgaactg
gccgacgaggtgcgcgaacaccagttccgctactacgtgcgggatgcgccgatcatctcc
gacgcggatttcgacgagctgctgcggcgactggccgagctcgaggagcagcatcccgag
ctgcgcacccccgattcgccgactcagctggtcggcggtgcgggattcgccaccgatttc
acctcagccgagcacctggaacggatgctgtcgctggacaacgtgttcagcaccgaggaa
ttcgacgtgtggtccgcccgcatccacgccgaggtcggtaacgacgtgcccttcctgtgt
gaactcaagatcgacggcgtcgcgctggcgctggtctaccgcggtggccggttggtccgc
gcggccactcgcggcgacgggcgcaccggcgaggacgtcacgaacaatgcgcgcaccatc
gacgatgtcccggaacggctgacggccagcgaccagtatccgatccccgatgtgctcgag
gtccgcggcgaggtgttcttccgggtcgccgacttcgaggcgctcaacgccgcgctggtc
gaggatggcaaggtgccgttcgccaacccgcgcaacagcgccgctggatcgctgcggcag
aaggatcccgcggtgaccgcccgccgcaagctccggatgatctgccacggcgtcgggcgc
accgagggatttcggccggtctccctgcacgacgcctatctggcgctgggtgcctggggt
ctgccggtctccgaccacaccacccgggtggacaacgccgcgggtgcgctggagcggatc
gcctattggggcgagcaccgccacgacgtcgatcacgaaatcgacggagtcgtcgtcaaa
atcgacgacgtcggactgcagcgtcggctggggtcgacgtcgcgggcaccgcgctgggcc
atcgcatacaaatacccgccgcaagaggtgcagacccagctactcgacatcaaggtcaac
gtcggtcggaccggacgtgtcacgccgtacgcggtgatggtgccggtcaaggtcgccggt
tcgacggtcgaaatggccaccctgcacaacgcttccgaggtcaagcgcaagggcgtgctg
atcggcgacaacgtggtgctccgcaaggccggcgacgtgattcccgaagtgctaggtccg
gtcgccgacctgcgcgacggcaccgaacgcgaattcgtgatgcccacgcactgtcccgag
tgcgccaccctgctggccccggccaaagagggcgacgccgacatccgctgccccaactcc
cgatcctgcccagcgcagttgcgggagagggtatttcacgtcgccggccgcggcgccttc
gacatcgagggcctgggctacgaggccgccatcgcgctgctggcggccgaggtgatcacg
gacgagggcgacctgttcaccctcgccgaggacgacctgttgcgcaccgagttattcacc
accaaggccggcacgctgtcggccaacgggaagcgattgctggccaacctcgaccgggcc
aaggcgcagcccctgtggcgagtgctggtggcgctgtcgatccggcatgtcgggccgacg
gcggcgcgcgccctggcgaccgagttcggcagcctcgacgcgatcacgtcggcgtcgacg
gacgaactggcggcggtcgagggagtcgggccgaccatcgccgccgcggtgaccgagtgg
ttcatggtcgactggcaccgcgcgatcgtcgacaagtggcgagcggccggcgtgcggatg
gccgacgaacgcgacgccagcacgccgcgcacgctcgccgggctgagcatcgtggtcacc
gggtcgctgaacgggttctcccgcgacgaggccaaggaggccatcgtgtcccgcggcggc
aaggcggcaggctcggtgtcgaagaacaccgcgtacgtcgtggccggcgattcgccgggc
tcgaagtacgacaaagcggtggaactgggtgtgccgatcctcgacgaggacgggtttcgg
cggctcctggccgaggggccggcatccggcggcacagccgattaa
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