Mannheimia succiniciproducens: MS1766
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Entry
MS1766 CDS
T00201
Symbol
lig
Name
(GenBank) Lig protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msu
Mannheimia succiniciproducens
Pathway
msu03030
DNA replication
msu03410
Base excision repair
msu03420
Nucleotide excision repair
msu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MS1766 (lig)
03410 Base excision repair
MS1766 (lig)
03420 Nucleotide excision repair
MS1766 (lig)
03430 Mismatch repair
MS1766 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msu03032
]
MS1766 (lig)
03400 DNA repair and recombination proteins [BR:
msu03400
]
MS1766 (lig)
Enzymes [BR:
msu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MS1766 (lig)
DNA replication proteins [BR:
msu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MS1766 (lig)
DNA repair and recombination proteins [BR:
msu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MS1766 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MS1766 (lig)
MMR (mismatch excision repair)
DNA ligase
MS1766 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MS1766 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
HHH_3
DZR_2
DUF4796_N
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AAU38373
UniProt:
Q65RN7
LinkDB
All DBs
Position
complement(1759301..1761328)
Genome browser
AA seq
675 aa
AA seq
DB search
MTIMDINQQIKQLRDTLRYHEYQYHVLDDPKIPDAEYDRLFHQLKALEQQHPELITADSP
TQRVGAKPLAGFAQITHELPMLSLDNAFSDEEFNAFVKRIQDRLIVLPQPLTFCCEPKLD
GLAVSIFYVNGVLTQAATRGDGTTGEDITLNIRTIRNIPLQLLTDNPPARLEVRGEVFMP
HEGFNRLNERALEHGEKTFANPRNAAAGSLRQLDPKITSRRPLVFNAYSVGIAEGVELPA
THYERLQWLKSVGIPVNSEVQLCDGSEKVLEFYRSMQQKRPTLGYDIDGTVLKINDIGLQ
RELGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLAPVFVAGVTVSNAT
LHNGDEIARLDIAIGDTVVIRRAGDVIPQIIGVLHERRPANAQAIVFPTQCPVCGSKIVR
IEGEAVARCTGGLFCDAQRKEALKHFVSRRAMDIDGVGAKLIEQLVDKELIRTPADLFKL
DLITLMRLERMGEKSAQNALDSLEKAKNTTLARFIFALGIREVGEATALNLANHFKNLDA
LQAASPEQLQEVADVGEVVANRIYVFWREQHNIDAVNDLIAQGIHWETVETKEAGENPFK
GKTVVLTGTLTQMGRNETKDLLQQLGAKAAGSVSAKTHFVIAGDNAGSKLTKAQELGVAV
MSEAEFLAIVNAYKR
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
ttgactataatggatattaatcaacaaattaaacaattaagggatacgctgcgttatcac
gaatatcaatatcacgtattagacgatccgaaaatccccgatgcggaatacgaccgttta
tttcatcaactaaaagcgctggagcaacagcacccggagttaattacggcggattcgccg
actcaacgggtcggcgccaagccgcttgccggatttgctcaaatcacccatgaacttccc
atgttatcgctggataacgctttctcagatgaagaatttaatgcctttgtaaagcgtatt
caggatcgattgattgtgttgccgcaaccgctgacattttgttgcgaacctaaattagac
gggctggcggtgagtattttttatgtgaacggcgtattaactcaagcggcgacccgcggc
gacggcacaacgggcgaagacattaccttaaatattcgcactatccgcaatattcccttg
caattattaacggacaatccgccggcccggctggaagtgcgcggtgaagtttttatgccg
cacgaaggttttaaccgcctgaatgagcgtgcccttgaacatggtgagaaaacttttgcc
aatccgcgtaatgcggcggcgggttcactgcgccagttagacccgaaaattaccagccgg
cgtcctttggtgtttaatgcttacagtgttggcattgccgaaggcgtggaattgcccgct
actcattatgaacggctacaatggctgaaatccgtgggtattccggtaaattctgaagtt
cagctatgtgacggaagcgaaaaagtgctggaattttaccgcagtatgcagcaaaagcgt
ccgaccttgggttacgatatcgacggtacggtgttaaaaatcaacgatattggcttgcag
cgggaattaggttttatttctaaagcgccgcgttgggcgattgcctataaatttccggcg
caagaggaattaacccggttaaatgatgttgaattccaagtgggcagaaccggcgcaatt
acgccggtggcaaaacttgcgccggtgtttgtggcgggcgttaccgtgagtaatgcaact
ttacataacggcgatgaaattgctcgccttgatatagccattggcgatacggtggttatt
cgtcgggcgggggatgtgattccgcaaattatcggcgtgcttcacgaacgccgtccggct
aatgcgcaggctattgtttttccgactcaatgcccggtctgcggttctaaaatcgtgcgt
attgaaggcgaagcggtggcacgctgtaccggcggcttattctgtgacgcccagcgcaaa
gaagcgcttaaacattttgtctcccgtcgggcaatggatattgacggtgtcggggcaaaa
ctgattgagcagttggtggataaagaacttatccgcacgccggcggatctgtttaaattg
gatttaattacacttatgcgtttggagcgtatgggggaaaaatccgctcaaaatgcgttg
gacagtttggaaaaagcgaaaaacaccacgcttgctcgctttatttttgccttaggtatt
cgtgaagtgggcgaggcgacggcgctgaatctggcgaatcactttaagaatttagacgcc
ttacaggcggcaagcccggagcaattgcaggaagtggcggatgtgggcgaagtggtggca
aaccgtatttatgtattttggcgcgagcagcataatattgatgcggtaaatgatctgatt
gctcaaggaattcattgggaaaccgttgaaacaaaagaagcgggcgagaatcctttcaaa
ggcaaaaccgttgtgcttaccggcacattaacgcaaatggggcgaaacgagacaaaagat
ttgctgcagcagctcggcgcaaaagcggcgggcagcgtttctgccaaaactcattttgtg
attgccggcgacaatgccggttccaaattaaccaaagcgcaggaattgggcgtggcggtg
atgagcgaggcggaatttctggctattgtgaacgcttacaagcgctaa
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