Mesobacillus subterraneus: LC048_21335
Help
Entry
LC048_21335 CDS
T09285
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msut
Mesobacillus subterraneus
Pathway
msut03030
DNA replication
msut03410
Base excision repair
msut03420
Nucleotide excision repair
msut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LC048_21335 (ligA)
03410 Base excision repair
LC048_21335 (ligA)
03420 Nucleotide excision repair
LC048_21335 (ligA)
03430 Mismatch repair
LC048_21335 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msut03032
]
LC048_21335 (ligA)
03400 DNA repair and recombination proteins [BR:
msut03400
]
LC048_21335 (ligA)
Enzymes [BR:
msut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LC048_21335 (ligA)
DNA replication proteins [BR:
msut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LC048_21335 (ligA)
DNA repair and recombination proteins [BR:
msut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LC048_21335 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LC048_21335 (ligA)
MMR (mismatch excision repair)
DNA ligase
LC048_21335 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LC048_21335 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_pol_A_CTD
BRCT_2
HHH_3
5_3_exonuc
RNA_ligase
Spectrin
Motif
Other DBs
NCBI-ProteinID:
WLR54899
LinkDB
All DBs
Position
complement(4087949..4089955)
Genome browser
AA seq
668 aa
AA seq
DB search
MDFQSAEKKAKDLQNLLNQYAYEYYVLDQPSVPDAEYDRLLRELVEIEEQFPELQTPDSP
TQRVGGEILTMFNKVQHAIPMLSLGNAFDEQDLRDFDRRVRQGVGDDVAYVCELKIDGLA
VSVIYEDGMLVRGATRGDGTTGEDITSNLKTIRSLPIRLKEQVALEVRGEAFMPKKSFEA
LNKARNEREEEPFANPRNAAAGSLRQLDPKIAASRNLDVFLYGIANVGDTGIRAHSEGLD
YLEKLGFKANKERRKVDSIEGVIEYVNSWVEKRPDLPYDIDGIVIKVDSLDQQAELGTTA
KSPRWAIAYKFPAEEVVTTLKDIELSVGRTGVVTPTAILEPVQVAGTTVGRASLHNEDLI
REKDIKIGDKVVIKKAGDIIPEVVNVLAEQRTGEEFEFHMPTECPECDSELVRIEGEVAL
RCINPKCPAQIREGLIHFVSRDAMNIDGLGERVVSQLFAEELIKDVADIYKLTREQLLGL
ERMGEKSVNNLLSAIEATKDNSLEKLLFGLGIRLVGAKAAKTLAQEFVTMDKLMQASKDE
LTAINEIGDKMADSIVTYFDSEEVSELVSELKAVGVNMEYKGPKKVTAEESDSFFAGKTI
VLTGKLEKMGRNEAKEKIEALGGNIAGSVSKKTDLVIAGEDAGSKLTKAESLGIEVWNEE
RMLEELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggattttcagagtgctgagaaaaaagccaaggatttgcaaaatctgcttaatcaatat
gcttatgagtactatgttcttgatcagccatcggttccggatgcggaatacgacaggctt
ttgagggaactggttgaaatcgaggagcaattcccagagctgcagactcctgattctcct
acacagcgtgtcggcggcgagattttaacgatgttcaataaagtccagcacgcgattccg
atgctgagtcttggaaatgccttcgatgagcaagacttgcgggattttgaccgtcgtgtt
cggcagggtgtcggtgacgatgtagcgtatgtttgcgagctgaagattgacgggctggca
gtctcggtcatttatgaggacggtatgcttgtacgcggtgcgactcgcggtgatggaacg
actggtgaggatattacgtctaaccttaagacgatccgttctttgcctatccgactgaaa
gagcaggttgcgcttgaagtacgaggagaggcgttcatgccgaagaaatcctttgaagca
ttgaataaagcgagaaacgaaagagaagaagagccatttgcgaacccgcgtaatgcggct
gcgggttcccttcgccagcttgatccgaagattgctgcttcaaggaatctggatgtgttc
ctgtacggaattgcaaatgtcggggacactggtatccgcgcgcatagcgagggactagat
tatctggagaagctgggattcaaagcgaataaagagcgcaggaaagtggacagcattgaa
ggggtcattgagtatgtgaacagctgggtcgaaaagcgcccggatctgccgtatgatatt
gatgggattgtcatcaaggtagattcacttgatcagcaggctgagcttggaacaacagca
aagagcccgcgctgggcaatcgcttataagtttcctgccgaggaagtcgtaacgactttg
aaggatatcgagttgagtgtgggccgcacaggcgttgtcacgccaactgccattcttgaa
cctgtacaagttgcaggtacaacggttggacgtgcttccttgcacaatgaagacttgatc
cgtgaaaaagatattaaaatcggcgacaaagttgtcatcaaaaaagcaggagatatcatt
cctgaagtcgtcaatgtccttgccgagcaacggacgggcgaagaatttgagttccatatg
cctacagagtgccctgaatgcgacagtgaacttgtccggattgaaggagaagtagcgctt
cgctgtatcaatccgaaatgtcctgcacaaatcagggaaggtctgatccacttcgtttcc
cgtgatgcaatgaacattgatggactcggtgaaagggtggtcagccagctgtttgcagaa
gagctgattaaggatgtagcggacatttataagctgacgcgcgagcagctgctgggtctt
gagcggatgggcgagaaatctgtaaacaatttgctgtcagcgattgaagcgacgaaggat
aattcattagagaaactattgttcggtcttggcattcgtcttgtcggtgctaaagccgca
aagacattggcccaggaattcgtaacaatggataaactgatgcaggcatccaaggatgaa
ctgacagcgatcaatgaaatcggcgacaaaatggccgactccatcgtcacttattttgac
agtgaagaagtgagtgagctggtttccgagctgaaagctgttggtgtcaatatggaatat
aaaggcccaaagaaggttaccgcagaagaatcggattcattttttgccggtaaaaccatc
gtgttaaccggaaagcttgagaagatgggacgaaacgaagcaaaagaaaaaattgaggcg
ctcggcggcaatatagccggcagcgtcagcaagaaaacagatttagtcattgccggtgaa
gacgcaggttctaagctgacaaaagcagaaagccttgggattgaagtgtggaatgaggag
agaatgcttgaagaattaaataagtaa
DBGET
integrated database retrieval system
