Microbacterium suwonense: GCM10025863_10090
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Entry
GCM10025863_10090 CDS
T09270
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msuw
Microbacterium suwonense
Pathway
msuw03030
DNA replication
msuw03410
Base excision repair
msuw03420
Nucleotide excision repair
msuw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msuw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GCM10025863_10090 (ligA)
03410 Base excision repair
GCM10025863_10090 (ligA)
03420 Nucleotide excision repair
GCM10025863_10090 (ligA)
03430 Mismatch repair
GCM10025863_10090 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msuw03032
]
GCM10025863_10090 (ligA)
03400 DNA repair and recombination proteins [BR:
msuw03400
]
GCM10025863_10090 (ligA)
Enzymes [BR:
msuw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GCM10025863_10090 (ligA)
DNA replication proteins [BR:
msuw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GCM10025863_10090 (ligA)
DNA repair and recombination proteins [BR:
msuw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GCM10025863_10090 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GCM10025863_10090 (ligA)
MMR (mismatch excision repair)
DNA ligase
GCM10025863_10090 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GCM10025863_10090 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
HHH
SnoaL_2
zf-TFIIB
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
BDZ38395
LinkDB
All DBs
Position
complement(953045..955129)
Genome browser
AA seq
694 aa
AA seq
DB search
MPENISLEAARAEAEELTERILEAKDAYYGRDTSLVDDATYDGWMHRLEELERRHPELQG
QDSPTQMVGAAESTGLATIEHAERMLSLDNVFSLDELREWEAKTRAAAGREVAWLTELKI
DGLAINLRYENGVLTSAATRGDGRVGEIVTENALRLADIPERLSGSGHPAIVEVRGEVFI
PVAAFERLNAAQAQFRDRAYADALARWEARGGVKKPFDEDRARTAAARRFPSFANPRNAA
SGGLRQQIEKKTGLELEAGLLRIDSLSLYVHGIGAWPNPPVSAQSEVYDLLSEWGLPTSP
HTRVCHGIDEVADFVAHFGEHRHDIEHELDGIVVKVDELALHDELGITSRAPRWAIAYKY
PPEEVQTRLLDIVVSVGRTGRATPFAVMEPAHVAGSVVRQATLHNKDVVKAKGVLIGDTV
VLRKAGDVIPEVLGPVVEKRDGSEREFVMPELCPECGTPLRPMKEGDIDLRCPNARSCPA
QVRGRVEHIGSRGALDIEALGEVTAAALTQAEPPAVPPLDTEAGLFSLVLEDLVPIDVVV
RDSETGLPKQDDDGIVKTRSPFRRNPTASEKKQGLNGPQPSSAATTLLAELEKAKTKELW
RLLVSLNIRHVGPVAARALAQWFGSLDAIRAASREELAAVEGVGGIIADSLLSWFEVDWH
QDIVRQWADAGVQWAPPGTLVLVRPSLREVCSQG
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgccggagaacatctcgctggaagccgcccgcgccgaggccgaggagctgaccgaacgc
atcctcgaagcaaaggacgcgtattacggccgcgacacctcgctcgtcgatgacgccacc
tacgacggctggatgcaccggctcgaagagctcgagcggcgccatcccgagctgcaggga
caggactcgccgacccagatggtgggtgcggccgagtcgaccggtctcgccacgatcgag
cacgccgagcggatgctgagcctggacaacgtattctccctcgacgagctgcgcgagtgg
gaggcgaagacccgcgctgcggccggccgtgaggtggcctggctcaccgagctgaagatc
gacgggctggcgatcaatctgcgctacgagaacggcgtgctcacctccgcggccacgcgg
ggcgacgggcgggtgggtgagatcgtgaccgagaacgcgctgaggctcgccgacatcccc
gagcgcctgtccggcagcggccatccggcgatcgtcgaggtgcgcggtgaggtgttcatc
cccgtcgcggcgttcgagcggctcaacgccgcacaggcgcagttccgcgaccgcgcctat
gccgacgcgctggcgcgctgggaggcgcgcggcggcgtgaagaagccgttcgatgaggac
agggctcgcacggcggccgcccggcgcttcccctccttcgcgaatccgcgtaacgcagcc
agcggcgggctgcggcagcagatcgagaagaagaccgggctcgagctcgaagcagggctc
ctgcgcatcgactccctgtcgctgtacgtgcatgggatcggcgcatggccgaatccaccg
gtgtcggcgcagagcgaggtgtacgacctgctctccgaatgggggctgcccaccagcccg
cacaccagggtctgccacggcatcgacgaggtcgccgatttcgtcgcccacttcggtgag
catcgtcacgacatcgagcacgagctcgacggcatcgtcgtgaaggtcgacgagctcgcg
ctgcacgacgaactcggcatcaccagccgtgcgccgcgatgggcgatcgcctacaagtac
ccgcccgaagaggtgcagacgagactgctcgacatcgtcgtctcggtcggccgcaccgga
cgggcgacgccgttcgccgtgatggagcccgcccatgtcgccggttccgtcgtccgccag
gccacgctgcacaacaaggatgtcgtcaaggccaagggcgtgctgatcggcgacaccgtc
gtgctgcgcaaggccggtgatgtgatccctgaggtcctcgggcccgtggtcgagaagcgg
gacggcagcgagcgggagttcgtgatgcccgagctctgcccggaatgcggcacgccgctg
cgcccgatgaaggagggcgacatcgacctgcgctgcccgaacgcgcggtcgtgccccgcg
caggtgcgcggcagagtcgagcacatcggctcgcgcggtgccctggacatcgaggcgctc
ggcgaggtgacagccgctgcgctgacgcaggcggagccgccggcggtccccccgctggac
accgaggcggggctcttctcgctcgtgctggaagacctcgtgccgatcgacgtggtcgtg
cgcgattccgagaccggtctgcccaaacaggatgacgacggcatcgtcaagacccgttcc
ccgttccgccgcaaccccacggcgtccgagaagaagcaggggctgaacggcccgcaaccc
tcgtcagcggcgacgacgctgctcgccgagctggagaaggcgaagaccaaggagctgtgg
cggctgctggtgtcgctgaacatccggcacgtcggcccggtcgcggcccgcgcgctggcg
cagtggttcggctccctcgacgccatccgcgcggcgagccgcgaagagctcgccgcggtc
gaaggggtcggcggcatcatcgccgactcgctgctgagctggttcgaggtggactggcac
caggacatcgtgcggcagtgggccgacgccggcgtgcagtgggcgcccccgggcaccctg
gtcctggtgcggccgtcgctgagggaggtgtgctcgcagggctga
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