Malus sylvestris (European crab apple): 126593063
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Entry
126593063 CDS
T09027
Name
(RefSeq) 5'-3' exoribonuclease 4-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
126593063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126593063
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
126593063
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
126593063
NCBI-ProteinID:
XP_050114884
LinkDB
All DBs
Position
12:30396554..30406828
Genome browser
AA seq
975 aa
AA seq
DB search
MGVPAFYRWLADRYPQSIADVVEEHPREDSNGVPLPVNVSRPNPNGYEFDNLYLDMNNII
HPCFHPDGKPPPATYNDVFKSVFDYIDHLFTLVRPRKLLFLAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLKKEFEMGGAYLVPKEKPETSDSNVITPGTQFMAVLSVALQYYIQ
SRLNHNPGWQSTKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
ALATHEVHFSILREVITFPGQQEKCFLCGQVGHLAAECRGVPDDNGNVVDETPIHQKKYQ
FLNVWVLREYLQYELDIPNPPFPLNFERIVDDFVFMCFFVGNDFLPHMPTLEIREGAINL
LMHIYRKEFTAMGGYLTDAGEVLLDRVEHFIQSVAVFEQQIFQKRVRIQQAIENNEERHR
ARRETSAELPAPVIDKVKLGEPGYTERYYAEKFQVSKPEEIDKVKKDLVLKYVEGLCWVC
RYYYQGVCSWQWYYPYHYAPFASDLKDLDELEITFFLGEPFKPFDQLMGTLPAASSSALP
EKYRNLMSDPRSPIHDFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLTETRKLESTLTE
EEQARNSIMLDLLYVCTSHPLAAHIIPYYQLCYQTPPHERCLWIIDTIASGGMNGFLWLS
ERNGVRHVIPSPVHGYPNLHYNQVLNVTYFYPTAHTHIPEPPEGVIMPRKVVRPTDIKPF
PTLWHDEGPRRQGRERPQIPGAIAGSMLGEAAHRLVKNTLNIRPSSSSSGFWDQPTLRNS
GNYAGNYPVNRPRSAGPSGYESGFREEFKYGNSFNPQVMMIRPRFLASNGMQGGRQNFRA
QERVQYQEQSFRTQEGVQYQEQYHNLRTAMSSLTVQGSVRTRSPAAAPPGMPNSGYQANH
QHQFVQNMGALPSPPTKWISKEPTGNGGLFVRQQETGYGGAYEQPQVKVYQVKTRAPQDM
SDRGDQSGSDSSGFV
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtccctgcgttttaccgctggctagcggatcggtacccgcagtccatcgcggac
gtcgtggaggagcatcctagagaggactccaatggcgtcccattgccagtcaacgtctcc
agaccaaatcctaacggatatgagttcgacaacttgtaccttgacatgaacaacattata
catccatgctttcatccggacggcaagcctccccccgcaacctataatgatgtattcaaa
tcagtatttgattacattgatcatctgttcacattggttcgcccaagaaagcttcttttt
ttggcaattgatggggttgctccaagagctaaaatgaatcagcaacgttctcgacgtttc
cgagctgcaaaagatgcggctgaagcagaagctgaagaggaaagactgaagaaagaattt
gagatgggaggggcatatttggttcctaaagagaaacctgaaacttcagactcaaatgtt
ataaccccaggcactcaatttatggcagtgctctcggtggcacttcaatattacatacaa
agcaggttgaaccacaaccctggttggcagtctacgaaggttatactttctgattcgaat
gttcctggcgagggagagcacaaaataatgtcatacatccggttgcaacgcaacctccct
ggttttgaccctaacactcgacattgtctttatggtttggatgcagatctgattatgctg
gctttagctacacacgaggttcacttctcaatattaagagaggtgattacttttccaggt
caacaagaaaaatgttttctttgtggacaagttggtcatctggcagctgagtgtcgtggt
gtacctgatgataatggaaatgtggttgatgaaacaccaattcaccagaaaaaatatcag
ttcctcaatgtatgggtattgcgtgaatatttgcaatatgagctggatattcccaaccct
ccttttccgctcaattttgaaaggatagtggatgattttgtttttatgtgtttttttgtt
ggcaatgactttcttccacatatgccaacattggagatcagagagggtgctattaattta
ttgatgcatatttatagaaaggagtttactgctatgggaggttatcttactgatgcgggt
gaggtattgttagacagagtggagcattttattcagtctgttgctgtttttgaacaacaa
atttttcaaaagcgggttcgaattcagcaggctattgagaataatgaagagagacataga
gctagaagagaaacttcagcagagctaccggctccggtgatagacaaggttaaattggga
gagcctggatacacagaaaggtattatgctgagaaatttcaagtatcaaaaccagaggag
attgataaagtcaaaaaggacttggttttaaaatatgtagaaggcttatgttgggtttgc
cgatattattaccaaggagtctgctcatggcaatggtattatccataccattatgctcct
tttgcttctgatctgaaagatttagatgaattggaaataacatttttcttgggagagcca
tttaagcccttcgatcagctcatgggaaccttaccagccgcaagctccagtgctcttccg
gaaaaatacagaaacttgatgagtgatccaagatctcctatccatgatttctaccctgct
gattttgaaattgacatgaatggcaagcgctttgcatggcagggcgttgccaaattgcca
ttcattgatgagaagaaattgcttacggagacaaggaagcttgaaagcactttaacggag
gaagagcaggctcggaatagcataatgcttgatttgctttatgtttgtacttctcatcct
ttggcagcacacatcattccgtactaccaactgtgttatcagacacccccacatgaaaga
tgtttatggatcatagacacaattgctagtggtggaatgaatggattcctttggttatct
gagagaaatggcgttagacatgtaatcccttcccctgttcatggttatccaaaccttcat
tataaccaagtcttaaatgttacctatttttaccccacagctcatacacacattccagaa
cctcccgagggtgtgataatgcccagaaaggttgtaagacctacggacatcaaaccattc
cctacgttatggcacgacgaaggtcctcgacgccaaggtagagagaggccacaaatacct
ggagcaattgctggatccatgttgggagaagcagctcatcgactagtcaagaacaccctt
aatattagacctagtagttcatcctccggattttgggatcaaccgacattacgaaattct
ggaaactatgcaggaaattatccagtcaaccgaccaagatcagctgggccctctgggtat
gagagtggcttccgcgaagaatttaagtacggaaattccttcaatcctcaggtcatgatg
attaggcctagatttctcgcatcaaatggtatgcaaggtggcagacagaattttagggca
caagaaagagtacaatatcaagaacagagttttaggacacaagagggagtacaatatcaa
gaacagtaccacaacctgagaaccgcgatgtctagtttaacagttcaaggcagtgtgaga
accaggtcaccagcagcggcgccacctgggatgccaaattcaggataccaagcaaaccat
cagcaccagtttgtgcagaacatgggtgcccttccttcgccacctaccaagtggattagc
aaagaaccaactggaaatggtggattatttgtaaggcaacaggaaactggatatggtgga
gcatatgagcaaccgcaggtcaaggtctatcaagttaagacgcgtgctccccaggatatg
tcagaccgtggagaccagagcgggagtgattcctcaggatttgtgtga
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