Malus sylvestris (European crab apple): 126601365
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Entry
126601365 CDS
T09027
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126601365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126601365
Spliceosome [BR:
msyl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
126601365
Complex C
U5 SnRNP specific factors
126601365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
EF-G_D2
Roc
Ras
Septin
K1-lyase_C
Motif
Other DBs
NCBI-GeneID:
126601365
NCBI-ProteinID:
XP_050124025
LinkDB
All DBs
Position
15:11810446..11815558
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AA seq
988 aa
AA seq
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MDDSLYDEFGNYIGPEIESDQESDREDEDEELPDRQEDGAASDGDDAATGPNGWLTAAND
VDVDNQVVLAEDKKYYPTAEEVYGEDVETLVMDEDAQPLEQPIIKPVRNVKFEVGVKDSS
TYVSNQFLLGLMSNPSLVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFDSNSEKHMRYTD
TRIDEQERRISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLIV
DAAEGMMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPRDAYFKIRHTLDVINTHI
TAASSTAGNVQTIDPVAGNVCFASATAGWSFTLQSFARLYLKLHGADNTDVDKFASRLWG
DMYYHQDDRSFRRKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAEFGVTLSN
AAYKLNVRPLLRLACSSVFGSASGFTDMLVQHIPSPKGAATRKVDHIYTGPKDSLIYRAM
KDCDPDGPLMVNVTKLYPKSDCSVFDAFGRVYSGKIQTGQTVRVLGEGYSPEDEEDMTVK
EVTKLWLYQARDRIPIAEAPPGTWVLIEGVDASIMKTATLCNEYYDEDVYIFRPLQFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVV
SIDWSRKDIGNFFQTRYEWDVLAARSIWAFGPDKQGPNILLDDTLSTEVDKSLLNAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDARIAQEPLHRGSGQIIPTSRRVAYSSFLMATP
RLMEPVYYVEIQTPIDCISAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFET
DLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSINKFFDEAMMVELAQQAADLHLQMI
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagtctgtacgatgagttcgggaactacataggcccggaaattgagtctgat
caagagagtgatagagaggacgaggatgaggagctacccgataggcaagaggatggggct
gcatcggacggcgatgatgcagctactggtcccaatgggtggctgactgccgccaatgat
gtcgatgtggataaccaggttgtccttgctgaggacaaaaagtattatccaaccgctgaa
gaggtctacggtgaagatgttgagacattggttatggatgaagatgcacagcctctggaa
caacccattattaagcctgttaggaatgtcaagtttgaggttggtgtcaaggattcttcc
acctacgtgtcaaatcagttccttttgggactcatgtcaaacccatctctggttcggaat
gttgcacttgttgggcatttgcagcatgggaagacggtgttcatggatatgttggtagag
cagactcaccatatgtccacttttgattcaaatagtgagaagcacatgaggtacactgat
acaaggattgatgagcaagagaggaggatatccattaaagcagttcctatgtcccttgta
ctcgaggatagcaggtctaaatcgtatttgtgcaacatcatggatacccctggtcatgtc
aatttctctgacgaaatgactgcagccctcaggcttgctgacggtgctgtcttgattgtg
gacgctgcagaaggaatgatggtaaataccgagagggctatacgccatgcaatccaagag
cgactaccaattgtggttgtaatcaacaaggttgacagattgataacagaactcaaattg
cccccaagagatgcttacttcaagataaggcatactttggacgtcattaatacccacata
actgcggcctcttcgactgctggcaatgtacaaactattgaccctgttgcaggaaatgtt
tgctttgcaagtgctactgcaggatggtcattcacgttgcaatcgtttgcaaggctatat
cttaaactccacggggccgataatacggacgtagataagtttgcttctcgtctctgggga
gatatgtactatcatcaggacgacaggagtttcaggagaaaaccccctgccagtggagga
gaaaggtcatttgtccaatttgtgctcgaacccctgtataagatttatagccaggtgatt
ggagaacataaaaagagtgtggaggcaactcttgccgaatttggtgtcacactcagcaat
gcagcttacaagttgaatgttagacctctgctgaggttggcttgtagctcagtctttgga
tctgcctcaggctttactgatatgctggttcaacatattccttcccctaaaggtgccgca
actaggaaagtagaccatatatatactggaccaaaagactctttgatttacagggccatg
aaagattgtgatcctgatggtcctttgatggtcaatgtgacaaaattgtatcccaagtcc
gactgtagtgtgtttgatgcatttggtagggtttatagtgggaagattcagacggggcag
actgtacgggtactgggagaaggctattcaccagaggacgaggaggacatgacagtcaaa
gaggtgacaaagttatggttgtatcaagctagagacaggataccaatagccgaggctcct
cctggtacttgggttcttattgaaggtgtggatgcttctattatgaaaactgccacccta
tgtaatgaatattatgacgaggatgtgtacatcttccgtcctcttcagttcaatactctg
ccagttgtgaaaacagcaactgagccactaaatccaagtgagctgccgaagatggtggag
ggactaagaaagataagcaagagttatcctcttgcaatcactaaagttgaggagtccggg
gagcacacaatattagggacaggagaactctacttggattcaataatgaaggacctaaga
gagctttattcggaagtagaagtcaaggttgcagatcctgttgtttcattttgtgaaaca
gtggtggagtcttcgtcaatgaaatgttttgctgaaacacccaataagaagaataaaata
actatgattgcagagccattggagagaggacttgctgaggacattgagaatggtgttgta
agcattgattggtctcggaaggatataggcaattttttccagactagatatgagtgggat
gttcttgctgcacggtccatatgggcatttggccctgataagcagggacctaacattcta
ttagatgacacactttccactgaagttgacaaaagcttgctaaatgctgtgaaggattcg
attgttcaagggtttcagtggggtgctcgagaaggacccctttgtgatgaaccaatcaga
aatgtaaagttcaaaattgtggatgcaaggattgcccaagagccattgcatcgtggatct
ggccagatcattcctacatcccgacgtgtggcctattcatctttcctgatggcaacaccg
cggcttatggaaccagtatattatgtggagatacaaacacccatcgactgtatttctgca
atctacactgttctatctcgcaggcgtggacatgttacagctgatgttcctcaacctggg
acccctgcttacatcgtcaaggcgttcttaccagtgattgaatcttttggctttgaaact
gacttgaggtaccatacccaaggacaggctttctgcctctcagtgttcgatcactgggct
atagttcctggggatccacttgataagagcatcgttctgcgaccccttgaacctgccccg
attcagcatctggcccgtgagtttatggtcaagacaagacgtagaaagggaatgagcgag
gatgtgagcattaacaaattcttcgacgaggctatgatggtggagctggctcagcaggca
gctgatcttcatctccaaatgatatga
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