Malus sylvestris (European crab apple): 126607005
Help
Entry
126607005 CDS
T09027
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
126607005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126607005
Enzymes [BR:
msyl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
126607005
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
126607005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
126607005
NCBI-ProteinID:
XP_050130378
LinkDB
All DBs
Position
16:complement(25979027..25995811)
Genome browser
AA seq
1163 aa
AA seq
DB search
MATDETKLSVLCSLFNWMQKSKTSTLKRSKFRKFLDNFCKPANYFSAIRLILPSLDRERG
SYGLKESVLATCLIDALGIARDSEDALRLINWRKGGAKTGANAGNFSLVAAEVLQRRQGL
SSGGLTIKELNDLLDRLASSENRAEKTSVLSTLINKTNAQEMKWIVMIILKDLKLGTSEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLSDRNQRHKRQDIEVGKAVRPQLAMRVGDANIAW
KKFHGKEVVVECKFDGDRIQIHKNGTEVHYFSRNFLEHSEYTHAMSDIIVENVLADRCIL
DGEMLVWDTSSSRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSVIHQSLKER
HELLQKVVNPLKGCLEILVPNRGLNAHCNEGEPCWSLIASSVDDVEKFFKDTIENRDEGI
VLKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGVVAQFLVGLAER
PVPNTYPRRFVSFCRVGTGLSDEEIEAVATKLKPYLRKYEYPKKAPPSFYQVRNNSKERP
DVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFIELV
QAGNGTTQRGTDYGGLQDTKKKSKKSPRKEEKRNLSIVASHFVQTDVSGVKEDTLLFSNM
MFYFVNVPPTHSFDSLHKLVVENGGTFSMNLNNAVTHCVAADGKGIKYQAAKHHGDIILI
SWVLDCCSQKKLLPLQPKYYLFLSDSSKKKLQEEIDDFSDSYYWDLDLAEIKQLLINIHR
SEDSEVVNYYKKKYCPVERWSRFHDCCIYFKSSIHSLKPDWEVVLGFTLRRLRIEVLRGG
GRVTDSLVHATHLVVLSVQGPDGFETLLRSFTEADKRYLHSKGLHIVGSQWLEDCLERDQ
RLQEETYSLKPYGLEESNVEEWKHDMGLEEALCDVDAVENHSSSFPNRKGKEIEVKAAPE
NCKILDSPERGSKRKRGRPARTSLNKGKSTVNQARRAWARIGRKPAKISGNESEESGSHD
NTSLGEEVDLGERIHGTVGQESIDIQENEAMKDSELLQRGKAVEQDVAEDIRIEEPYKIP
EIKMMEKHNVQESEKPEELEATADPVEAMLFDMIPSLGMKKAETTYTSTRDEKPARDPIP
NAGPSKKKKVSYKDIASELLKDW
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgacgagaccaagctcagcgtgctctgcagcctcttcaactggatgcagaaa
tccaaaacctcaaccctaaagcgttccaaattccgcaaatttctcgacaatttctgcaaa
cccgccaattacttcagcgccattcgcctcattcttcccagcctcgaccgcgagcgcggc
tcctacggcctcaaggagtccgtgcttgccacctgcctcatcgacgccctcggcatcgcc
agagactccgaggacgctctccgcctcattaattggcgcaaaggtggcgccaagaccggc
gccaatgccgggaacttctccctcgtggcggcggaggtgttgcaacgtagacaggggttg
agttcaggtggactaacaatcaaggagttaaatgacttgcttgatcgtttagcttcgagt
gaaaacagggcagagaagacttcagttctttcaaccttgataaacaagacaaatgcacag
gaaatgaagtggattgtcatgatcattcttaaagatctgaagctgggaactagtgaaaag
agcatctttcacgaatttcatccagatgctgaagatttgtttaatgtcacatgcgacttg
aaattggtctgtgaaaagctcagtgatagaaatcagcgccataaacgccaggacattgaa
gttggaaaagctgtgcgcccacaactagctatgagagttggtgatgcaaatattgcatgg
aaaaagtttcatggtaaggaagtggttgttgagtgtaaattcgatggcgatcgcatccaa
attcataagaacggaactgaagtacattacttctcaaggaattttcttgagcactctgaa
tacacacatgcaatgtcagacattatcgtagaaaatgtgctggctgataggtgtattctt
gatggtgagatgttggtctgggacacatcttctagtcgttttgctgagtttggttcaaat
caagaaatagccaaggcagcaagggacgggcttgacagtgatagacagttgtgctatgtt
gcattcgatatcctctatgttggagatactagtgtgattcaccagagcttgaaggaacga
catgagcttctccagaaagttgtgaatccattgaagggttgtttagagattttagtaccc
aatcgtggtcttaacgctcactgtaatgaaggggaaccttgctggtcgcttattgctagt
agtgtggatgatgttgagaagtttttcaaagataccatcgaaaatagagatgaggggatt
gttttgaaggaccttggttcgaaatgggaacctagtgatcgtagtggaaaatggttaaaa
ttaaagccagactacattcgtgcaggttctgatctggacgttcttatcataggaggatac
tatggctctggacgtcgtggaggagtggtagctcagttcttggtgggtcttgctgagcgt
ccagttccaaatacatatcctagaaggtttgtatccttttgcagagtgggcactggactt
tctgatgaagagatagaagctgttgcaacaaaattaaagccgtatttgaggaaatatgag
tacccaaaaaaggcaccaccaagtttttatcaagtaagaaacaattctaaagagaggcca
gatgtttgggttgaaagccctgagaaatcaataatactttctataacgagtgacatcaga
actataaagtctgaggtttttgctgcaccgtacagcctgagatttccacgtattgatcgt
gttagatatgataaaccttggcatgaatgccttgatgtgcagtcatttatagagcttgta
caagcaggcaatgggaccacacaaagggggacggattatggtggtctgcaggatactaaa
aagaaaagcaagaagtcccctagaaaggaagagaaaagaaatctgtctattgtcgcctct
cattttgttcagactgatgtttcgggcgtgaaggaggacacattactattttcaaatatg
atgttttactttgttaatgtgcctcccactcattcttttgattccttgcacaagctagta
gttgagaatgggggtactttctctatgaatttaaataatgctgttacacactgtgttgca
gctgatggcaaagggatcaagtatcaggcagcaaagcatcatggagatatcattcttatc
tcttgggtgttggattgttgttctcaaaagaaactccttccattacagccaaagtactat
ctcttcttatctgactcttctaagaagaagttacaagaagagattgatgatttttctgac
tcgtactactgggatcttgaccttgcggagataaagcagcttttaatcaacattcataga
tcagaggactccgaagttgttaactattacaagaaaaaatactgtccggtggagagatgg
tctcgctttcatgactgctgcatttactttaaatcctcaattcattccttgaagccggat
tgggaagttgtcttaggattcacactgagaaggttgaggattgaagttctcaggggtggt
ggcagagtcactgacagtcttgttcatgcgacccatttggtagtcttgtccgtgcagggt
cctgatggatttgaaactttattacgaagtttcactgaagcagacaaacgatatctgcat
agcaaagggttgcatattgttggatctcaatggttggaagactgcttggaaagggaccaa
agattgcaagaggaaacatatagcttaaaaccctatgggttggaagaatccaacgttgaa
gaatggaaacatgacatgggtctagaagaagcactctgtgatgtggatgctgtggaaaac
cacagttcttcttttcctaaccggaaaggaaaagagattgaagtaaaagcggctccagaa
aactgtaagatcttggactcacccgagaggggaagcaaaaggaaaaggggaagacctgct
cgcacaagcttgaacaaaggaaaatcaactgtcaaccaagctagaagagcatgggcgcgt
attggaaggaagccagctaaaatatctggcaacgagtcagaagagagtggctctcatgac
aatacatcacttggggaagaggttgatctgggagaaagaattcacggaacggtaggtcag
gaaagtatagacatccaagaaaatgaagcaatgaaagattctgaattgttacaaagaggc
aaagcagttgagcaagacgtcgctgaggacattagaattgaagagccttacaaaattcct
gaaatcaaaatgatggagaaacataacgtccaagaaagtgaaaagccggaggaacttgaa
gctacggctgatcctgttgaagccatgttgtttgacatgattccaagtcttggtatgaaa
aaagctgaaactacatatacgagtactcgagatgagaaaccagcacgggatccgataccg
aatgcaggaccttcaaagaaaaagaaagttagctacaaggatattgctagtgagctgctg
aaggattggtaa
DBGET
integrated database retrieval system
