Malus sylvestris (European crab apple): 126608810
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Entry
126608810 CDS
T09027
Name
(RefSeq) transcription factor SPATULA-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04075
Plant hormone signal transduction
msyl04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
126608810
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
126608810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msyl03000
]
126608810
Transcription factors [BR:
msyl03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
126608810
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
126608810
NCBI-ProteinID:
XP_050132769
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All DBs
Position
16:2415362..2419362
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AA seq
390 aa
AA seq
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MVNMRNQLPEWKTTIAKSSTTTTTTTTTYDGEYSQGFPYENFGVLPIDSVVLDPPTDNSH
WNNTSSSISAAAAAGGDDHKHFQEIFQNLSYIQLDPFLQMQQPTRNIFSHDKEVMLCGLS
LEKGDFSGKTTTSHEMETKPVMLSGEFKQSKDERPKRSRATELHNLSERVGQPPTQLIMR
RNKIRGKLKVLQELIPNCNKTDRASMLDDAIKYIKSLQLQVQMMSMGGGAVYQTPNLSLA
GIQGTQMSQFKPYLPMGPGLGTSNAYEIGMGLGMAMGMINMCYTTGVPTMSVHSATAGLP
LMSGPGGLPVNPQVQMQIPFLASQVMPSTTAATSNIVQPRFPTNFSRIFNYANQAGESSS
PNTASDNEKVPFINQKSKVMASHVVTTTSN
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atggttaacatgcgcaaccaattgcccgagtggaaaactaccatcgccaagtcgtccacc
accaccaccaccaccaccaccacatatgacggtgaatactctcaaggctttccgtatgaa
aatttcggtgtgcttcctattgattcggttgtccttgaccctccaactgataattctcat
tggaacaatactagtagcagcattagtgcagctgcggcagctggaggagatgaccataaa
cattttcaagaaatatttcagaatttgtcgtatattcagcttgatccattcttacaaatg
cagcagcccacacgcaatattttctcgcacgacaaagaggttatgttgtgtgggttaagc
ttggaaaaaggagatttcagtggaaagacgacgacgtcccatgagatggaaactaaacct
gtaatgctttctggagaatttaagcaaagcaaagacgaacggcccaaaagaagccgtgct
actgaactgcataatttgtctgagagggtgggccaaccacccactcagcttatcatgcgt
aggaacaaaatccgggggaagctgaaggtgctacaggagcttatacccaactgtaacaag
acagaccgagcttcaatgctggacgatgcgattaaatatatcaaatccttgcagcttcaa
gtacaaatgatgtccatgggtggaggagctgtgtaccagactccaaatttatcattggct
gggattcaaggcacgcaaatgtcccaatttaagccgtatttgcccatgggaccgggactg
ggaacgagcaatgcgtatgaaattgggatgggattgggaatggcaatgggaatgattaat
atgtgttatacaacaggcgttccaaccatgtcagttcactcagcaactgcagggttgcca
ctgatgtctggaccgggaggtctacccgttaatcctcaagtgcaaatgcaaattccattc
cttgcttcgcaagtaatgcctagcacaaccgcggctacatcaaatattgttcagccacga
tttcctacaaatttctcccgcatattcaactatgctaaccaagctggagagtctagttca
ccaaacacagctagtgacaacgagaaagtgccatttataaaccagaaatctaaggtgatg
gctagtcatgtggtgacaaccacatcaaattag
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