Malus sylvestris (European crab apple): 126612289
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Entry
126612289 CDS
T09027
Name
(RefSeq) DNA repair protein RAD16
KO
K15083
DNA repair protein RAD16
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126612289
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
126612289
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-RING_UBOX
ResIII
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_5
zf-RING_2
zf-C3HC4_4
DEAD
Prok-RING_4
zf-RING_6
zf-Nse
Motif
Other DBs
NCBI-GeneID:
126612289
NCBI-ProteinID:
XP_050136630
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Position
17:8358612..8365004
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AA seq
875 aa
AA seq
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MELRSRKRTAGPSSDGNEQHEEKEDAYSPSDEDTYVPPSSPSASDFESEEGEEYQNNVEV
VFDLNDKPNGKMKEPAIKKSKVVVENKAEAGGPSSMVPAPRFTSGEIDDLRLHDKKKKKN
RKSGGQKRRWQWNTWEEEHDKWLDDNVTEDFDLDTQKNVICDAAEAPSDLIMPLLRYQKE
WLSWAVKQEESETRGGILADEMGMGKTIQAITLVLAKRELNSTCYDTGSSTSFPRIKTTL
VVCPVVAVSQWVSEIERFTSKGSTKVLVYHGANREKSSQIFSEYDFVITTYSIVEADYRK
NVMPPKQKCQYCGKLYYEKKMSTHLKYFCGPNAFRTEKQSKQQRRKHPQPVSQKTFESKG
KNGASRKRSALNEEDDMDSEDIGQRLSLDKSVLHSVKWNRIILDEAHYIKSRRCNTAKAV
LALESSYKWALSGTPLQNRVGELYSLIRFLQLVPYSYYLCKDCDCRTLDHSSAAQCSNCP
HNSVRHFCWWNKYVATPIQIYGNHIQGKRAMYLLKHKILKNIVLRRTKKGRAADLALPPR
IVSLRRDTLDIKEQGFYESIYNDTQSQFNAFVEEGTVMNNYAHIFDLLTRLRQAVNHPYL
VVYSASAALRNGSNINVNEKICGICHEAAEDPVVTACEHVFCKACLLDFAASLGQVSCPT
CSKPVTVDFTTTPGPANQTKTTIKGFRSSSILNRIKLENFQTSTKIEALREEIRSMVEKD
GSAKGIVFSQFTSFLDIINYSLQKSGVNCVQLVGSMTMSARDNAIKRFTEDPDCRIFLMS
LKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIMRFVIENTIEDRIL
KLQEKKELVFEGTIGGASDALAKLTEADLRFLFVT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atggagcttcgttctcgcaagcgcaccgccggcccttcgtccgacggaaatgagcaacac
gaggaaaaggaagatgcttattcaccgtctgatgaggatacttatgtaccaccgtcttcg
ccttccgcttctgattttgagagtgaagaaggtgaagagtaccaaaacaatgtggaagtt
gtttttgacttgaatgataaacctaatggtaaaatgaaggagcctgcgataaaaaagtcg
aaggtggtggtggagaacaaggcagaagcaggaggaccaagctcgatggtgccagccccc
aggttcacatcaggtgaaattgacgatcttaggttgcacgacaaaaaaaagaaaaagaat
cgtaaatctggggggcaaaagcggcgttggcagtggaatacgtgggaagaggagcatgat
aaatggcttgatgacaacgtaactgaagattttgatctggatactcagaagaatgtgata
tgcgatgctgctgaggcaccatctgatctgattatgcctttgctaaggtaccagaaggaa
tggttgtcatgggccgtgaaacaggaagagtctgaaactagaggaggaatcctagcagat
gagatgggaatggggaagactattcaagccattactcttgtccttgctaaacgggaactt
aattcgacatgttatgacactggttcttccacaagctttcctagaatcaaaaccaccctt
gtagtttgccctgtagttgctgtgagtcaatgggttagtgaaatagagcggtttacttca
aagggaagtacaaaggttttggtttatcatggggctaatagagagaagagttcccaaatt
ttctcagagtatgattttgtcattactacatactctattgtcgaggctgactacaggaag
aatgtgatgcctcccaaacaaaagtgtcaatattgtggaaagttgtattacgagaagaaa
atgtcaactcacttaaaatatttttgtgggcctaacgcttttagaactgagaagcagtct
aagcaacaaaggagaaagcatccacaaccagtgtcgcagaagacatttgagtctaaagga
aagaatggagcttccaggaagagatcagcactgaacgaggaagatgatatggattcagaa
gatattggacagcgcttgagcctagataagtcagttttgcattctgtgaagtggaaccgt
atcattttggatgaggcccattatataaaatcaaggcgttgtaatactgcgaaagcagtt
cttgctttagagtcttcatacaaatgggctctaagtggcacacctcttcagaaccgtgtt
ggagaactttattctttgatccgcttcttgcagttagtcccctactcatattacttatgc
aaggattgtgattgcaggactcttgatcatagctccgcagcacaatgttcgaattgccct
cataattcagttagacatttttgttggtggaataaatatgtggcgacaccgatacagata
tatggaaatcatatccaaggcaaaagggccatgtatttgctaaaacacaaaattctaaag
aacatagtcctgcgacgaactaaaaagggcagggctgctgatcttgcactacctcctaga
attgtttcattgaggcgggacaccttggatatcaaagaacaaggtttttatgagtcaata
tataatgatactcagtcacaatttaacgcatttgtcgaagagggaactgtgatgaacaat
tatgctcacatatttgaccttctcactcgcttgcgacaggctgttaatcatccttacctt
gtggtgtattctgcatctgctgcactgagaaatggaagcaacattaatgtcaatgagaaa
atctgtggaatttgtcatgaagcagcagaagatccagtggttactgcttgtgagcatgtg
ttttgcaaggcttgcttgcttgattttgctgcttctttgggacaagtctcatgcccgaca
tgctctaaaccagttactgttgatttcactacaacaccaggtcctgctaatcagaccaag
actaccattaaggggtttagatcttcaagcattttgaacagaattaagcttgaaaatttt
cagactagcacaaaaattgaggctttgagggaagaaatcagatccatggttgaaaaggat
ggctctgcaaaaggaattgttttcagccagttcacatcgttcttggatatcattaactac
tccttgcaaaagtccggtgtcaattgtgttcagttggtcggaagcatgactatgtctgca
agggataatgccataaagagatttaccgaggatccagattgcaggattttcttaatgagc
ttgaaagctggaggtgttgctcttaatctgacagttgcatcgcatgttttcttgatggac
ccgtggtggaacccagcagttgagaggcaagcacaagatagaatccaccggatagggcag
tacaaaccgatcagaattatgagatttgtgattgagaacactattgaggaccggattcta
aagctacaggagaaaaaggaattagtgttcgaggggaccatcggtggtgcttcagacgct
cttgcaaaattaacagaagccgacttgagattcctctttgtcacctaa
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