Malus sylvestris (European crab apple): 126614041
Help
Entry
126614041 CDS
T09027
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126614041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126614041
Spliceosome [BR:
msyl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
126614041
Complex C
U5 SnRNP specific factors
126614041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
EF-G_D2
Septin
Ras
Motif
Other DBs
NCBI-GeneID:
126614041
NCBI-ProteinID:
XP_050137636
LinkDB
All DBs
Position
2:1000760..1006214
Genome browser
AA seq
988 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDQESDREDEDEELPDRQEDRDASDGDDAAAGPNGWLTASND
VDMDNQVVLAEDKKYYPTAEEVYGEDVETLVMDEDAQPLEQPIIKPVRNVKFEVGVKDSS
TYVSNQFLLGLMSNPSLVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFDSNSDKHMRYTD
TRIDEQERRISIKTVPMSLVLEDSKCKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLIV
DAAEGMMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPRDAYFKIRHTLDVINTHI
TAASSTAGNVQIIDPVAGNVCFASATAGWSFTLQSFAKLYLKLHGADNTDVDKFASRLWG
DMYYHPDDRSFRRKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAEFGVTLSN
AAYKLNVRPLLRLACSSVFGYASGFTDMLVQHIPSPKGAATRKVDHIYTGPKDSLIYKAM
KDCDPDGPLMVNVTKLYPKSDCSVFDAFGRVYSGKIQTGQTVRVLGEGYSPEDEEDMTVK
EVTKLWLYQARDRIPIAEAPPGTWVLIEGVDASIMKTATICNEYYDEDVYIFRPLQFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVV
SIDWSRKDIGNFFQTRYEWDVLAARSIWAFGPDKQGPNILLDDTLSTEVDKSLLNAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDARIAQEPLHRGSGQIIPTSRRVAYSSFLMATP
RLMEPVYYVEIQTPIDCISAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFET
DLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSINKFFDEAMMVELAQQAADLHLQMI
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagtctgtacgatgagtttgggaattacataggcccggaaatcgagtctgat
caagagagtgatagagaggacgaggatgaggagctgcccgataggcaagaggatagggat
gcatcagatggcgatgatgcagctgctggtcccaatgggtggctgactgcgtccaatgat
gtcgatatggataaccaggttgtccttgctgaggataaaaagtattatccaaccgcggaa
gaggtctatggtgaagatgttgagacattggttatggatgaagatgcacagcctctggaa
caacccattattaagcctgttaggaatgtcaagtttgaggttggtgtcaaggattcttcc
acctacgtatcgaaccagttccttttgggactcatgtcgaacccctctctggttaggaat
gtagcacttgtggggcacttgcagcacgggaagacagtgttcatggatatgttggtggag
cagactcaccatatgtctacttttgattcaaatagcgataagcacatgaggtacacggat
acaaggattgatgagcaagagaggaggatatccattaagacagttcctatgtcccttgta
ctcgaggatagcaagtgtaaatcgtatttgtgcaacatcatggatacgcctggtcatgtc
aatttctctgatgaaatgactgcagcccttaggcttgccgatggtgctgtcttgattgtg
gacgctgcagaaggaatgatggtaaataccgagagggctatacgccatgcaatccaagag
cggctaccaattgtggttgtaatcaacaaggttgacagattgataacagaactcaaattg
cccccaagagatgcttacttcaagataaggcatactttggacgtcattaatacccacata
actgcggcctcttcaactgctggcaatgtacaaattattgaccctgttgcaggaaatgtt
tgctttgcaagtgctaccgcaggatggtcattcacgttgcaatcgtttgcaaagctatat
cttaaactccatggggctgataatacggacgtagataagtttgcctctcgtctttgggga
gatatgtactatcatccggatgacaggagttttaggagaaaaccccctgccagtggaggc
gaaaggtcatttgtccagtttgtgctcgaacccctgtataaaatttatagccaggtgatt
ggggaacataaaaagagtgtggaggcaactcttgctgaatttggtgtcaccctcagcaat
gcagcttacaagttgaatgttagacctctgctgaggttggcttgtagctcagttttcgga
tatgcctcaggctttactgatatgctggttcaacatattccttctcctaaaggtgccgca
acgaggaaagtagaccatatatatactggaccaaaagactctttgatttacaaggccatg
aaagattgtgatcctgatggtcctttgatggtcaatgtgacaaaattgtatcccaagtcc
gactgtagtgtttttgatgcatttggtagggtttatagtggcaagattcagacagggcag
actgtgcgggtattgggagaaggctattcaccagaggatgaggaggacatgacagtcaaa
gaggtgactaagttatggctttatcaagctcgagacaggataccaatagccgaggctcct
cctggtacttgggttcttattgaaggtgtggatgcttctataatgaaaactgccaccatc
tgtaatgaatattacgacgaggatgtgtacatcttccgtcctcttcagttcaatactctg
ccagttgtgaaaacagcaactgagccattaaatccaagtgagctgccaaagatggtggag
ggactaagaaagataagcaagagttatcctcttgcaatcactaaagttgaggagtctggg
gagcacacgatattaggtacaggagaactctacttggattcaataatgaaggatcttaga
gagttatattcagaagtagaagtcaaggttgcggatcctgttgtttcattttgtgaaaca
gtggtggagtcttcgtcaatgaaatgttttgctgaaacacccaataagaagaataaaata
actatgattgcagagccattggagagaggacttgctgaggacattgagaatggtgttgta
agcattgattggtcgcggaaggatataggcaattttttccagactagatatgagtgggat
gttcttgctgcacgttccatatgggcatttggccctgataagcagggacctaacattcta
ttagatgacacactttccactgaagtcgacaaaagcttgctgaatgctgtgaaggattca
attgttcaagggtttcagtggggtgctcgagaaggacccctttgtgatgaaccaatcaga
aatgtcaagttcaaaattgtggatgcaaggattgcccaagagccattgcatcgtggatct
ggccagatcattcccacatctcgacgtgtggcctattcatctttcctgatggcaacacca
cggcttatggagccagtatattatgtggagatacaaacacccatcgactgtatttctgca
atctacactgttctatctcgcaggcgtggacatgttactgctgatgttcctcaacctggg
acccctgcttatatcgtcaaggcgttcttaccagtgatcgaatcatttggctttgaaact
gatttgaggtaccatacccaaggacaggctttctgcctctcagtgtttgatcactgggct
atagtccctggggatccacttgataagagcatcgttctgcgaccccttgaacctgcccca
attcagcatctggcccgtgagtttatggtcaagacaagacgtagaaagggaatgagcgag
gatgtgagcatcaacaaattcttcgacgaggctatgatggtggagctggctcagcaggca
gctgatcttcatctgcaaatgatatga
DBGET
integrated database retrieval system
