Malus sylvestris (European crab apple): 126619539
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Entry
126619539 CDS
T09027
Name
(RefSeq) transcription factor PIF3-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04075
Plant hormone signal transduction
msyl04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
126619539
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
126619539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msyl03000
]
126619539
Transcription factors [BR:
msyl03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
126619539
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Ortholog
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_IRO3
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
126619539
NCBI-ProteinID:
XP_050143891
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Position
4:complement(26468237..26472971)
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AA seq
711 aa
AA seq
DB search
MPFSELYRMAGRVDSSQDFENDFLELVWENGQVVMQGQSSRTRKNPSCNTLPSYNTPKNR
DRDVGNSNIGKTGKFGFVVDSELDEIPLSVPSSEMGLSEDDDMLPWLNYSIDEPLHHEYC
HDFLPEFSSATANEASSNHNLASIDKRSSSSQVLRDSNPNSAHEDACLQQRNVGKVALIG
RADVSRPRTGTSQLYSLSSQQSQASYPSFRSRVSDTAGDNTSATHRDVGKNSNQISSTAG
FPGMKMQRQDPVMPRNTNPSIMNFTHFSRPAALAKANVQNNGAMAGSGSSSMERIENKDK
FSAATRNNLPESTLIDSSSGAPKESNSQCQPILVRSSDELKATKAKPLEEPCTAKRSEGA
CQEETSKNDINANDKPCESASRVSPGREKTLEPVVASSVCSGNSVERGSDDPTHALKRKC
RETDESECHSDDVEDESVGVKKGAHARGKGSKRSRAAEVHNLSERRRRDRINEKMRALQE
LIPNSNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGMYMPPMMLSPGMQHMHGPRMAHFS
PMGVGMGMGLGMGFGMGMPDMNGASSSYPILQVPPMQGAHFPGSHMAGHNAFNGMMGSNL
QMFGLPSQGVPMQMQRAPLAPSSGGPLVKSSAGPNAGSSGGPVENVESAPVSGSKDWVQN
MNSQVMQNNNANSSINPTSSQGQATNEGFGQTALVRNNVQAADANNNRANR
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgcctttttccgagctttatcggatggccggaagggttgattcaagtcaagattttgaa
aatgattttcttgagttggtatgggaaaatggtcaggttgtgatgcagggtcagtccagt
agaactaggaagaatccatcttgtaataccttaccgtcttataacaccccgaaaaatcga
gatagagatgtaggaaatagcaacattgggaagacagggaaatttgggtttgtggtggat
tctgaattggatgaaattccgttgtcggtgccatcttctgagatgggtttgagtgaggat
gatgacatgttgccttggttgaattattccattgatgagcctttacatcatgagtactgt
catgattttttgcctgaattttctagtgcaactgcaaatgaggcttcctccaatcataat
cttgcctcgatcgataagaggagtagttctagtcaggtgcttagggattccaatcccaat
tctgcacatgaagatgcttgtttgcaacaaaggaatgtgggaaaggttgctttaatcggc
cgtgctgatgttagcagacctagaactggtactagtcagttgtactcgttatcatcgcag
caatctcaagcatcgtatccatctttcagatcaagggtttcggatactgctggtgataat
actagtgccacccatcgtgatgttggcaagaattcaaatcagatttcatctacggccggt
tttcctggaatgaaaatgcagaggcaagatccagtaatgcctagaaacactaatccatcc
ataatgaactttacccatttttcacggccagctgctcttgcaaaagctaatgttcagaac
aacggtgcgatggctggctcaggttcatcaagcatggaaaggattgaaaacaaggacaag
ttttcagctgcaaccaggaacaatctgcccgagtcaacgctaattgattcaagcagtggt
gcaccgaaggagtcaaattcacaatgccagccaattctagtgagatccagtgatgaattg
aaagcaacaaaagctaagcctctcgaggaaccatgtactgctaagcggtctgagggggca
tgccaagaagaaacctctaagaatgacataaacgccaatgataaaccttgtgaaagtgct
agtagggtatctccaggtcgtgaaaaaactctggaacctgttgttgcttcttctgtttgc
tcaggcaatagtgtggagagaggttcagatgacccaacacatgctttgaagagaaaatgt
cgtgagactgacgagtctgaatgccatagtgatgacgtagaggatgaatctgtgggtgtc
aagaaaggagctcatgctcggggcaagggttccaagagaagcagagcagcagaagtgcat
aatttatcggaaaggaggcgaagggacagaatcaatgagaagatgcgtgcgctacaggaa
ctcataccgaattccaataaggtggacaaagcttcaatgctcgatgaggctattgagtat
ttaaagacgcttcaactccaagtacagattatgtcaatgggagctggtatgtatatgcca
ccaatgatgttatcaccaggaatgcaacacatgcatggaccccgtatggctcatttctca
cccatgggtgttggaatgggaatgggattaggcatgggttttgggatgggtatgcccgac
atgaatggtgcatcttctagttaccctattcttcaggtgccccccatgcaaggagcacat
ttccctggttcacatatggcagggcacaacgccttcaatgggatgatgggatctaacctt
cagatgtttgggcttcctagtcaaggagttcctatgcagatgcaacgtgcgcccttagct
ccctcatcaggaggtccccttgtgaagtcatctgcaggaccaaatgcaggcagttcagga
ggacctgtggaaaatgtggaatcagctccagtttctggttcaaaggattgggttcagaac
atgaactctcaagtgatgcaaaacaacaatgccaatagctctatcaatccaacatctagt
cagggccaagcaacaaatgagggatttggacagactgcattggtgcgaaataatgttcaa
gcagctgatgctaacaacaacagagctaacagataa
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