Malus sylvestris (European crab apple): 126620134
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Entry
126620134 CDS
T09027
Name
(RefSeq) 5'-3' exoribonuclease 4-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
126620134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126620134
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
126620134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
126620134
NCBI-ProteinID:
XP_050144575
LinkDB
All DBs
Position
4:28907290..28916765
Genome browser
AA seq
962 aa
AA seq
DB search
MGVPAFYRWLADRYPQSIADVVEEHAREDSNGVPVPVDVSGPNPNGSEFDNLYLDMNGII
HPCFHPDGKPAPATYDDVFKSIFDYIDHLFTLVRPRKLLFLAIDGVAPRAKMNQQRSRRY
RASKDAAEAEAEEERLKKEFEMEGTSLPSKEKPETLDSNVITPGTQFMAVLSVALQYYIQ
SRLNHNPGWRSTKVILSDANVPGEGEHKIMSYIRLQRSLPGFDPNTRHCLYGLDADLIML
ALATHEVHFSILREVITFPGQQEKCFLCGQVGHLAAECRGISDDNGNVVDDTPIHQKKYQ
FLNIWVLREYLQYELDIPNPPFQLNFERIVDDFVFMCFFVGNDFLPHMPTLEIREGAINL
LMHIYRTEFTAMGGYLTDAGEVLLDRVEHFIQSVAVFESQIFQKRVRIQQAIENNEERHR
ARRETSAELPAPVMDKVKLGEPGYTERYYAEKFQVSTPEEIDKVKKDLVLKYVEGLCWVC
RYYYQGVCSWIWYYPYHYAPFASDLKDLNELEITFFLGEPFKPFDQLMGTLPAASSSALP
EKYRNLMTDPRSPIHNFYPADFEIDMNGKRFAWQGVAKLPFINERKLVTETRKLESTLTE
EEQARNSVMLDLLYVYPSHPLAAQISMYYQQFYQTPLHERFLWRIDPIASGGMNGFLGLS
ERNGLRYVIPSPIRGYPDLDCNQVLNITYLNPADHKHIPEPPKGVILPRKVVRPTDIKPF
PTLWHDEGPRRQGRERPQIPGAIAGPMLGEAAHRLVKNTLNIKPNGSSPGLWDQPPLRNS
GNYAGNYPVNRPRPAGPSGYERVFREEATYGNSFNPQVMMARPRIPASNGMQGDRQNFRA
QERVQHQEQNFRTQDRVQDQEQYNLRSVMSSLTVQDSGRTRSPAAAPPGMPNSGYQANRK
HQFVQNMGALPSPPTKWISKEPTGNGGLHVRKQETGYGGAYEQQQVKKVYQVKTRAPQDV
KP
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttcctgcgttttaccgctggctagcggatcggtacccacagtccatcgccgac
gtcgtggaggagcatgccagagaggactccaatggcgtccctgtgccagtcgacgtctcc
ggaccgaaccctaatgggtccgagttcgacaacttgtaccttgacatgaacggcattata
catccctgttttcatcccgatgggaagcctgcccccgctacctatgatgatgtattcaaa
tcaatatttgattacattgatcatctattcacattggttcgcccaagaaagcttcttttt
ttggcaattgatggggttgctccaagagccaaaatgaatcagcaacgttctcgacgttac
agagcttcaaaagatgcggctgaagcggaagctgaagaggaaagacttaagaaagaattt
gagatggaggggacatctttgccttctaaagagaaacctgaaactttagactcaaatgtc
ataaccccgggcactcaatttatggcagtgctctcggtggcacttcaatattacatacaa
agtaggttgaaccacaaccctggttggcggtctacgaaggttatactttctgatgcaaat
gttcctggcgagggagagcacaaaataatgtcatacatccgattgcaacgcagcctccct
ggttttgatcctaacactcgacattgtctttatggtttggatgcagatctaattatgctg
gctttagctacacatgaggttcacttctcaatattaagagaggtgattacttttccaggt
caacaagaaaaatgttttctttgtggacaagttggtcatttggcagctgagtgtcgtggt
atatctgatgataatggaaacgtggttgatgatacaccaattcaccagaagaaatatcag
ttcctcaacatatgggtattgcgtgaatatttgcaatatgagctggatattcccaaccct
ccttttcagctcaattttgaaaggatagtggatgattttgtttttatgtgcttttttgtt
ggcaatgactttcttccacatatgccaacattggagatcagagagggtgctattaattta
ttgatgcatatttatagaacggagttcactgctatgggaggttatcttactgatgcgggt
gaggtattgctagacagagtagagcattttattcagtctgttgctgtttttgaaagccaa
atctttcaaaagcgggttcgaattcagcaggctattgagaataatgaagagagacataga
gctagaagagaaacttcagcagagctaccggctccggtgatggacaaggttaaattggga
gagcctggatatacagaaaggtattatgctgagaaatttcaagtatcaacaccagaagag
attgataaagttaaaaaggacttggttttaaaatatgtagaaggcttatgttgggtttgc
cgatattattaccaaggagtctgctcatggatatggtattatccataccattatgctcct
tttgcttctgatctaaaagatttaaatgaactggaaataacatttttcttgggagagcca
tttaagcccttcgatcagctaatgggaaccctaccagctgcaagctctagtgctcttccg
gaaaaatacagaaacttaatgactgatccaagatcacctatccataatttctatcctgct
gattttgaaattgacatgaatggcaagcgctttgcatggcagggtgttgccaaattgccg
ttcattaacgagaggaaattggttactgagacaaggaagcttgaaagcactttaacggaa
gaagagcaggctcggaatagcgtgatgcttgatttgctttatgtttatccttctcatcct
ttggcagcacaaatcagtatgtactaccaacagttttatcagacacccctacatgaaaga
tttttatggcggatagacccaattgctagtggcggaatgaatggattccttgggttatct
gagagaaatggcttaagatatgtaatcccttcccctattcgtggttatcctgaccttgat
tgtaaccaagtcttaaatattacatatcttaatccggcagatcataaacacatcccagaa
cctcccaagggtgtgatcctgcccagaaaggttgtaagacctacggacatcaaaccattc
cctacgttatggcacgacgaaggtcctcgacgccaaggcagagagaggccacaaatacct
ggagcaattgctggacccatgttgggagaagcagctcaccgcctggtcaagaacaccctt
aatattaaacctaatggttcatcccctggattatgggatcaaccgccattacgaaattcc
ggaaattatgcaggaaattatccagtcaacagaccaaggccagctgggccctctgggtat
gaaagggtcttccgcgaagaagcaacgtatggaaattccttcaatcctcaggtcatgatg
gctaggcctagaattcctgcatcaaatggtatgcaaggtgacagacagaattttagggcg
caagaaagagtacaacatcaagaacagaattttaggacacaagatagagtacaagatcaa
gaacagtacaacctgagatccgtgatgtctagtttaacagtacaagacagtgggagaacc
aggtcacctgcagcggcgccacctgggatgccaaattcaggataccaagcaaaccgtaag
caccagtttgtgcagaacatgggtgctcttccttcgccacctaccaagtggattagcaaa
gaaccaactggaaatggtggattacatgtaaggaaacaggaaactggatatggtggagca
tatgagcaacagcaggtcaagaaggtctatcaagttaagacgcgggctccccaggatgtc
aaaccgtag
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