Malus sylvestris (European crab apple): 126624202
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Entry
126624202 CDS
T09027
Name
(RefSeq) ABC transporter I family member 19-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126624202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126624202
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
126624202
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
ORC-CDC6-like
AAA_28
NACHT
AAA_15
AAA
PduV-EutP
AAA_18
AAA_24
AAA_22
AAA_23
AAA_5
AAA_25
Arf
AAA_33
SRP54
AAA_14
ATP-synt_ab
AAA_30
Zeta_toxin
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
126624202
NCBI-ProteinID:
XP_050149196
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Position
5:complement(31849946..31852297)
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AA seq
287 aa
AA seq
DB search
MAEEASSGIRVQGMQFAYDAQPPLFCDFSLEITPGSRCLLIGANGSGKTTLLKILAGKQM
VGGRDVVRVLNCSAFHDTHLVCSGDLAYLGGSWTKTVGSAGELPLQGDFSAEHMIFGVEG
TDPVRRDKLIELLDIDLRWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVVARM
DLLDFFKEECEQRGATIVYATHIFDGLETWATHLAYIQDGELKRAERLSEVNELKSSVNL
LSVVESWLRAETKSDKKKSSNPPAQIKKTSPFASSPFTSSRHMAYYR
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagaagcatcgagcggcatcagagtccagggcatgcaatttgcgtacgacgcg
cagcccccgctcttctgcgatttcagcctcgagataacccctggatcccgatgccttctc
atcggtgccaatggatctggtaagaccacgttgctgaagattctagctgggaagcagatg
gtgggagggagagatgtggtgcgagtgttgaattgttcagcatttcatgacacgcatttg
gtttgcagtggcgatttggcttacttgggtggctcttggaccaaaactgttggctctgct
ggagaacttcccttgcagggagatttctcagctgagcatatgatttttggagtcgaaggg
actgatcctgttaggagagataagttgattgagctgcttgatatagacctgcggtggaga
atgcataaagtatctgacgggcaacggcgtcgagtccaaatctgcatgggacttcttcat
ccctttaaggttctcttgcttgatgaggtaacagtcgacttggatgtcgttgctaggatg
gacttactagatttcttcaaggaagaatgtgagcagaggggagctacaattgtatatgca
acccatatctttgatgggttggagacatgggcaacgcatctggcttacatccaagatggt
gagctaaagagggctgagaggttgtcggaggttaatgagttgaagagttcggtcaatctg
ctctctgttgttgaatcctggctccgtgctgagaccaagtccgacaaaaagaaatcctca
aatccccctgcccaaattaaaaagacctcgcctttcgccagttctccatttacgtcatca
aggcacatggcgtattaccgctga
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