Methylobacterium tardum: M6G65_00050
Help
Entry
M6G65_00050 CDS
T08338
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mtad
Methylobacterium tardum
Pathway
mtad03030
DNA replication
mtad03410
Base excision repair
mtad03420
Nucleotide excision repair
mtad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mtad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M6G65_00050 (ligA)
03410 Base excision repair
M6G65_00050 (ligA)
03420 Nucleotide excision repair
M6G65_00050 (ligA)
03430 Mismatch repair
M6G65_00050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mtad03032
]
M6G65_00050 (ligA)
03400 DNA repair and recombination proteins [BR:
mtad03400
]
M6G65_00050 (ligA)
Enzymes [BR:
mtad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M6G65_00050 (ligA)
DNA replication proteins [BR:
mtad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M6G65_00050 (ligA)
DNA repair and recombination proteins [BR:
mtad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M6G65_00050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M6G65_00050 (ligA)
MMR (mismatch excision repair)
DNA ligase
M6G65_00050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M6G65_00050 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
MutL
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
URD37065
LinkDB
All DBs
Position
complement(10756..12876)
Genome browser
AA seq
706 aa
AA seq
DB search
MAEFVARVRRFLGWPDETPLAFTAEPKIDGLSLSLRYVNGRLDTAATRGDGEVGENVTAN
ARTVQDIPAALAGSGWPEICEVRGEVYLSHADFAAINARQEAAGKPLFANPRNAAAGSLR
QLDPGITASRPLKFFAYAWGELSAPIAETQSGALQRFASWGLPVNPLTETFTDTAAMLAH
YRRIEADRAGLGYDIDGVVYKVGDLALQKRLGFVSRSPRWALAHKFAAQEATTVAEDIVI
NVGRTGSLNPLAKLRPVTVGGVVVSNATLHNEGYVKGVGADGEPIRDGRDIRVGDTVTVV
RAGDVIPKVMDVDLSKRPADSQPYAFPETCPACGSRAVRAINPRTGRADAVRRCTGGLIC
PAQGVERLKHFVSRNGFDIEGFGETYIEVLFEAGLVRQPADLFRLDFEKLKAAIVARREA
LSAERRAESGTAEPPKKASKKKGEEEDKAIKNLLAGVEARRQVPMNRLLFALGIPQIGEA
TAKALAKRFSDMPALIAAIRAASAAQPGPDWVELTAVPRVGGTTRDRLLDLGYPEDGATP
AKERARLSTVQRENLLAHYGDADAVRAAIARAAEQRPGDAYRVFADDGEIGPVATDALLL
FFAEPHNADAVSALLDAVEVEPMERAASASAFAGKTVVFTGTLEKMTRNEAKAVAERLGA
KVSGSVSAKTDLVVAGPGAGSKLKDAQKHGVRVVSEDDWLGMVAQG
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtggccgagttcgtcgcacgcgtgcgccgcttcctcggctggcccgacgagacgcccctc
gccttcacggccgagcccaagatcgacggcctgtccctgtcgctccgctacgtcaacggc
cgcctcgacaccgcggcgacccgcggcgacggcgaggtcggcgagaacgtcaccgccaat
gcccgcaccgtgcaggacatcccggcggcgctcgccgggtccggatggccggagatctgc
gaggtgcgcggcgaggtctacctgtcccacgccgacttcgccgccatcaacgcccgccag
gaggcggccggcaagccgctcttcgccaatccgcgcaacgccgccgccggcagcctgcgc
cagctcgatccggggatcaccgcatcccggccgctcaagttcttcgcctatgcctggggc
gagctctcggcgccgatcgcggagacgcaatccggcgccctgcagcgcttcgcgtcctgg
ggcctgccggtaaacccgctcaccgagaccttcaccgacaccgcggcgatgctcgcgcat
taccgccggatcgaggcggaccgggccgggctcggctacgacatcgacggcgtcgtctac
aaggtcggcgacctcgcgctccagaagcggctcggcttcgtctcgcgctcgccgcgctgg
gcgctcgcgcacaaattcgccgcgcaggaggcgacgaccgtcgccgaggacatcgtcatc
aacgtcggtcgcaccggctcgctgaacccgctggccaagctgaggccggtgaccgtcggc
ggcgtggtcgtgtccaacgcaaccctgcacaacgagggctacgtgaagggcgtcggcgcc
gacggcgagccgatccgcgacggccgcgacatccgggtcggcgacaccgtgacggtggtc
cgcgccggcgacgtcatcccgaaggtgatggatgtcgacctgtcgaagcgcccggcggat
tcgcagccctacgccttcccggagacctgcccggcctgcggcagccgcgccgtgcgcgcg
atcaacccgcgcaccggccgcgccgacgcggtgcgccgctgcaccggcggactgatctgc
ccggcgcagggggtggagcgtctgaagcacttcgtgtcgcgcaacggcttcgacatcgag
ggcttcggcgagacctatatcgaagtgctgttcgaggcggggctcgtgcgccagccggcc
gacctgttccggctcgatttcgagaagctgaaggccgccatcgtggcgcggcgcgaggcg
ctgtcggccgagcggcgggcagaatccggcacggccgagccgcccaagaaagcttccaag
aagaagggcgaggaggaagacaaggcgatcaagaacctgctcgccggcgtcgaggcgcgc
cgccaggtcccgatgaaccgcctgctcttcgccctcggcattccgcagatcggcgaggcg
accgccaaggctttggccaagcgcttttccgacatgccggcgctgattgcggcgatccgc
gccgcatcggccgcacagccgggccccgactgggtcgaactgacggccgtcccgcgggtc
gggggcacgacccgggaccgcctgctcgatctcggctaccccgaggacggcgcgacgccg
gccaaggagcgcgcccgcctcagcactgtgcaacgcgagaatctgctcgcccattacggc
gacgccgacgccgtgcgcgcggcgatcgcccgggcggccgagcagcgccccggggatgcc
tacagggtcttcgccgatgacggcgagatcggcccggtcgccaccgacgcgctgctcctg
ttcttcgccgagccgcataacgccgacgccgtctcggcgctgctcgacgcggtcgaggtc
gagccgatggagcgggccgcttcggcctccgccttcgcgggcaagaccgtcgtcttcacc
ggcacgctggagaagatgacccgcaacgaggccaaggcggtggccgagcgcctcggcgcc
aaggtttccggctcggtctcggccaagaccgatctcgtcgtcgcgggtccgggggccggg
tcaaagttgaaggacgcccagaagcacggtgtgcgggtggtctcggaagacgattggctc
gggatggtggcgcagggttga
DBGET
integrated database retrieval system
