Candidatus Moanabacter tarae: DF168_00618
Help
Entry
DF168_00618 CDS
T09872
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mtar
Candidatus Moanabacter tarae
Pathway
mtar03030
DNA replication
mtar03410
Base excision repair
mtar03420
Nucleotide excision repair
mtar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mtar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DF168_00618 (ligA)
03410 Base excision repair
DF168_00618 (ligA)
03420 Nucleotide excision repair
DF168_00618 (ligA)
03430 Mismatch repair
DF168_00618 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mtar03032
]
DF168_00618 (ligA)
03400 DNA repair and recombination proteins [BR:
mtar03400
]
DF168_00618 (ligA)
Enzymes [BR:
mtar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DF168_00618 (ligA)
DNA replication proteins [BR:
mtar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DF168_00618 (ligA)
DNA repair and recombination proteins [BR:
mtar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DF168_00618 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DF168_00618 (ligA)
MMR (mismatch excision repair)
DNA ligase
DF168_00618 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DF168_00618 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
BRCT_2
PTCB-BRCT
LRS4
E1-E2_ATPase
Motif
Other DBs
NCBI-ProteinID:
AWT59429
LinkDB
All DBs
Position
complement(681927..684152)
Genome browser
AA seq
741 aa
AA seq
DB search
MLDGNTASRIVFLRSKIKRYDEIYFRAAQQGTQPEISDQDYDNLKSELAELEERNPKLKT
DDSPTQNVGDDRLEGFKTYIHRQPMLSLDNTYNKEELFDFERRLQRILGPKKLIYVIEPK
IDGVAVSLTYEKGSLKRAVTRGNGAEGDDITASVSHIEDLPRTLIGPKAPEIIEIRGEIY
MTLEEFKRINRERAARGKPLFTNPRNFAAGSVKLLDQNVARERKLEIVLYAMGSCEPQMF
ETQVSFQEALRSWAMPVVEQYWLAHGIEQAWVSIKELDQRRHKFRYATDGAVIKLNDTER
QSLAGSTAKAPRWAIAYKFAAEQAATRLRAITVQVGRTGRLTPVAELDPLDLAGTTVSRA
SLHNAEEISRKDIRVGDTVVVEKAGEIIPAIIQVITENRPEDSQPFDLLEHLNGVCPSCG
EPIHRLEGFVDYSCVNFQCTAQVTSRIEFFASRRALNIESLGGIVAEKIVENFHINSPVD
LFDLEEVQLSKLNLGTENSPHQFGPKNAAKIVEALHRSRNLPLSRWLYGFGIPYVGEAKA
KEISKLHKNLKSTAKSKVLHTIVALSRLKEERNAISPNSRKTPPKSEPEREERKIRFHNL
GKEILELEQSLDELPPASEIGPVSAQNTIRFFESGFGTELIHRLMVHGINPHSDNYLKLD
SDNSRLLEGKTFVLTGTLPSFTRDETKAIIEQAGGKILSSVTKATDYLVAGESPGSKLGK
ATMLNIKILNESGLLSLLNKL
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgcttgatggtaatactgcgtctcgaattgtcttcctcaggagtaaaatcaagcgatat
gacgaaatctattttcgggcagctcaacaaggtacccaacccgaaatttccgatcaggat
tacgataatctgaaatctgaattggcagaattggaggaaaggaatcctaaacttaaaacg
gacgattctccgacccaaaatgtgggtgacgatcggcttgaaggatttaaaacttatata
caccggcaaccgatgctgagcctggacaacacctacaataaagaggaactctttgacttc
gaaagacgacttcaaaggatcctcggtccaaagaagctaatttatgtaatagaacccaag
atcgacggggtagcggtcagtctcacctatgagaaaggatcgttaaagagggcagtaact
cgcgggaacggagccgaaggagacgatattacggcaagtgttagccatattgaggatctg
cctcgaacacttatagggcccaaagcgcctgaaatcattgaaattcgcggtgaaatctat
atgactcttgaggaattcaagcgaatcaacagggaacgtgctgcaagaggaaaacctcta
tttaccaatcctaggaatttcgctgcagggtcagtaaaactgctcgatcagaatgtcgcc
cgagaacggaaacttgagattgtcctatacgcaatgggctcgtgcgaaccccaaatgttc
gagactcaagtcagcttccaagaagcattgagatcttgggcaatgccagtggtggaacaa
tactggctcgctcatgggatcgagcaggcatgggtcagcataaaagaactagaccaacgg
cgccataaatttcgctatgccaccgacggtgcggtcatcaaactcaacgacaccgaaaga
caatcccttgccggctcaaccgcaaaagcccccagatgggctatagcttataaatttgct
gccgaacaagccgcaacacgcttacgagccattactgtacaggtgggacggaccggacga
ctaactcctgtcgcagaacttgatcctttagatctagctggaacaacggtgtcgagagca
tccctgcataatgcagaagaaatatcaaggaaggacatccgagttggggacacagtagtg
gtcgagaaagctggtgaaatcattccggcaattatccaagtgataaccgagaataggccg
gaggattctcagccctttgatctcctggaacacttgaacggagtttgtccctcctgtggg
gaacccatccatcgtctagagggatttgttgattatagttgcgtcaattttcagtgcact
gctcaagtgaccagccgcatagaattttttgccagtcgtagagcacttaatattgaaagc
cttggcggcatcgtagcggaaaaaattgttgaaaacttccatattaattcgccagtcgac
ctcttcgatttggaagaggtccagctctcaaaacttaatctgggaacagaaaattctccg
caccaatttggtcctaaaaatgcggccaaaatagtagaggccttacaccgttcgagaaat
cttccgctctctcgttggctctacggttttggtattccctatgtgggtgaggctaaagcc
aaagagatatccaaattgcacaagaatctgaaatcaactgcaaaatcaaaggtcctgcat
acgattgtcgctctctcccggttgaaggaggaaaggaacgccatttctccgaattcccga
aaaaccccaccaaagtcagaaccagaaagggaggaacggaagattagattccacaacctt
ggaaaagaaattctggaactcgagcaatccttggatgaactgcctccagcatccgagatt
ggacccgtatccgcccaaaatacaatccgctttttcgaatccggatttggcactgaactc
atccatagacttatggtacatggaatcaacccgcatagcgacaattacctgaaactggat
tcagacaattcccgccttctcgagggaaaaacgttcgttctaactggaactctcccttcc
tttactcgagacgagacaaaagcaataatcgagcaagcgggaggaaaaatattatcttcg
gtaaccaaagcgaccgactaccttgtagccggagagtcaccaggttcaaaactcgggaaa
gctacaatgctaaacataaagatcctcaacgaatccggactactgagcctgctaaacaaa
ctttag
DBGET
integrated database retrieval system
