Mycobacterium tuberculosis KZN 1435: TBMG_00956
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Entry
TBMG_00956 CDS
T00940
Name
(GenBank) NAD-dependent DNA ligase ligA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mtb
Mycobacterium tuberculosis KZN 1435
Pathway
mtb03030
DNA replication
mtb03410
Base excision repair
mtb03420
Nucleotide excision repair
mtb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mtb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TBMG_00956
03410 Base excision repair
TBMG_00956
03420 Nucleotide excision repair
TBMG_00956
03430 Mismatch repair
TBMG_00956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mtb03032
]
TBMG_00956
03400 DNA repair and recombination proteins [BR:
mtb03400
]
TBMG_00956
Enzymes [BR:
mtb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TBMG_00956
DNA replication proteins [BR:
mtb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TBMG_00956
DNA repair and recombination proteins [BR:
mtb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TBMG_00956
NER (nucleotide excision repair)
GGR (global genome repair) factors
TBMG_00956
MMR (mismatch excision repair)
DNA ligase
TBMG_00956
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TBMG_00956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
Bactofilin
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ACT23997
LinkDB
All DBs
Position
1039810..1041234
Genome browser
AA seq
474 aa
AA seq
DB search
MRQKDPAVTARRRLRMICHGLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVR
ERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDI
RVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIKRKGVLIGDTVVIRKAGDVIPEV
LGPVVELRDGSEREFIMPTTCPECGSPLAPEKEGDADIRCPNARGCPGQLRERVFHVASR
NGLDIEVLGYEAGVALLQAKVIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNL
DKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAV
TEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVA
RGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADGPASRT
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
ctgcgccagaaagacccggcggtcaccgcgcgccgccggctgcggatgatctgccacggg
ctgggccacgtggagggctttcgcccggccaccctgcatcaggcatacctggcgttgcgg
gcatggggactgccggtttccgaacacaccaccctggcaaccgacctggccggtgtgcgc
gagcgcatcgactactggggcgagcaccgccacgaggtggaccacgaaatcgacggcgtg
gtggtcaaagtcgacgaggtggcgttgcagcgcaggctgggttccacgtcgcgggcgccg
cgctgggccatcgcctacaagtacccgcccgaggaagcgcagaccaagctgctcgacatc
cgggtgaacgtcggccgcaccgggcggatcacgccgtttgcgttcatgacgccggtgaag
gtggccgggtcgacggtgggacaggccaccctgcacaacgcctcggagatcaagcgcaag
ggcgtgctgatcggcgacaccgtggtgatccgcaaggccggcgacgtgatccccgaggtg
ctgggacccgtcgtcgaactgcgcgatggctccgaacgcgaattcatcatgcccaccacc
tgcccggagtgcggttcgccgttggcgccggagaaggaaggcgacgccgacatccgttgc
cccaacgcccgcggctgcccggggcaactgcgggagcgggttttccacgtcgccagccgc
aacggcctagacatcgaggtgctcggttacgaggcgggtgtggcgctcttgcaggcgaag
gtgatcgccgacgagggcgagctgttcgcgctgaccgagcgggacttgctgcgcaccgac
ctgttccgaaccaaggcaggcgaactgtcggccaacggcaaacggctgctggtcaacctc
gacaaggccaaggcggcaccgctgtggcgggtgctggtggcgctgtccatccgccatgtc
gggccgacggcggcccgcgccctggccaccgagttcggcagccttgacgccatcgccgcg
gcgtccaccgaccagctggccgccgtcgagggggtggggccgaccattgccgccgcggtc
accgagtggttcgccgtcgactggcaccgcgagatcgtcgacaagtggcgggccgccggg
gtgcgaatggtcgacgagcgtgacgagagtgtgccacgcacgctggccgggctgaccatc
gtggtcaccggctcgctgaccggtttctcccgcgacgacgccaaggaggcgatcgtggcc
cgcggcggcaaggccgccggctcggtgtcgaagaagaccaactatgtcgtcgccggagac
tcgccgggatccaaatacgacaaggcggtggagttgggggtgccgattctggacgaggat
gggttccggagactgctggccgacggacccgcgtcacgaacgtaa
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