Mycobacterium tuberculosis CCDC5079: CCDC5079_2769
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Entry
CCDC5079_2769 CDS
T01991
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mte
Mycobacterium tuberculosis CCDC5079
Pathway
mte03030
DNA replication
mte03410
Base excision repair
mte03420
Nucleotide excision repair
mte03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CCDC5079_2769
03410 Base excision repair
CCDC5079_2769
03420 Nucleotide excision repair
CCDC5079_2769
03430 Mismatch repair
CCDC5079_2769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mte03032
]
CCDC5079_2769
03400 DNA repair and recombination proteins [BR:
mte03400
]
CCDC5079_2769
Enzymes [BR:
mte01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CCDC5079_2769
DNA replication proteins [BR:
mte03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CCDC5079_2769
DNA repair and recombination proteins [BR:
mte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CCDC5079_2769
NER (nucleotide excision repair)
GGR (global genome repair) factors
CCDC5079_2769
MMR (mismatch excision repair)
DNA ligase
CCDC5079_2769
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CCDC5079_2769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
DNA_ligase_ZBD
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AEJ47959
LinkDB
All DBs
Position
complement(3348026..3349684)
Genome browser
AA seq
552 aa
AA seq
DB search
MSSPDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPE
LRTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAHYLC
ELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLE
VRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGH
VEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVK
VDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAG
STVGQATLHNASEIKRKGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPE
CGSPLAPEKEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVAALAGEGDR
RRGRAVRADRAGLAAHRPVPNQGRRTVGQRQTAAGQPRQGQGGTAVAGAGGAVHPPCRAD
GGPRPGHRVRQP
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
gtgagctccccagacgccgatcagaccgctcccgaggtgttgcggcagtggcaggcactg
gccgaggaggtgcgtgagcaccagttccgttattacgtgcgggacgcgccgatcatcagc
gacgcggaattcgacgagctgctgcgccgtctggaagccctcgaggagcagcatcccgag
ctgcgcacgcccgattcgccgacccagctggtcggcggtgccggcttcgccacggatttc
gagcccgtcgaccatctcgaacgaatgctcagcctcgacaacgcgttcaccgccgacgaa
ctcgccgcctgggccggccgcatccatgccgaggtcggagacgccgcacattacctgtgt
gagctcaagatcgacggcgtcgcgctgtctttggtctaccgcgagggacggctgacccgg
gcctccacccgcggcgacgggcgcaccggcgaggacgtcaccctgaacgcccggaccatc
gccgacgttcccgaacggctcacccccggcgacgactacccggtgcccgaggtcctcgag
gtccgcggcgaggtcttcttccggctggacgacttccaggcgctcaacgccagcctcgtc
gaggagggcaaggcgccgttcgccaacccccgcaacagcgcggcgggatcgctgcgccag
aaagacccggcggtcaccgcgcgccgccggctgcggatgatctgccacgggctgggccac
gtggagggctttcgcccggccaccctgcatcaggcatacctggcgttgcgggcatgggga
ctgccggtttccgaacacaccaccctggcaaccgacctggccggtgtgcgcgagcgcatc
gactactggggcgagcaccgccacgaggtggaccacgaaatcgacggcgtggtggtcaaa
gtcgacgaggtggcgttgcagcgcaggctgggttccacgtcgcgggcgccgcgctgggcc
atcgcctacaagtacccgcccgaggaagcgcagaccaagctgctcgacatccgggtgaac
gtcggccgcaccgggcggatcacgccgtttgcgttcatgacgccggtgaaggtggccggg
tcgacggtgggacaggccaccctgcacaacgcctcggagatcaagcgcaagggcgtgctg
atcggcgacaccgtggtgatccgcaaggccggcgacgtgatccccgaggtgctgggaccc
gtcgtcgaactgcgcgatggctccgaacgcgaattcatcatgcccaccacctgcccggag
tgcggttcgccgttggcgccggagaaggaaggcgacgccgacatccgttgccccaacgcc
cgcggctgcccggggcaactgcgggagcgggttttccacgtcgccagccgcaacggccta
gacatcgaggtgctcggttacgaggcgggtgtggctgctcttgcaggcgaaggtgatcgc
cgacgagggcgagctgttcgcgctgaccgagcgggacttgctgcgcaccgacctgttccg
aaccaaggcaggcgaactgtcggccaacggcaaacggctgctggtcaacctcgacaaggc
caaggcggcaccgctgtggcgggtgctggtggcgctgtccatccgccatgtcgggccgac
ggcggcccgcgccctggccaccgagttcggcagccttga
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