Microbacterium terricola: OAU46_07200
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Entry
OAU46_07200 CDS
T08704
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mtec
Microbacterium terricola
Pathway
mtec03030
DNA replication
mtec03410
Base excision repair
mtec03420
Nucleotide excision repair
mtec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mtec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OAU46_07200 (ligA)
03410 Base excision repair
OAU46_07200 (ligA)
03420 Nucleotide excision repair
OAU46_07200 (ligA)
03430 Mismatch repair
OAU46_07200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mtec03032
]
OAU46_07200 (ligA)
03400 DNA repair and recombination proteins [BR:
mtec03400
]
OAU46_07200 (ligA)
Enzymes [BR:
mtec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OAU46_07200 (ligA)
DNA replication proteins [BR:
mtec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OAU46_07200 (ligA)
DNA repair and recombination proteins [BR:
mtec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OAU46_07200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OAU46_07200 (ligA)
MMR (mismatch excision repair)
DNA ligase
OAU46_07200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OAU46_07200 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
SnoaL_2
Motif
Other DBs
NCBI-ProteinID:
UYK41408
LinkDB
All DBs
Position
1494398..1496728
Genome browser
AA seq
776 aa
AA seq
DB search
MTDAEGAAAPTLDDARAEAGALTERILGARDAYYGRDAEIVDDATYDTWMRRLEELERLH
PELQSQDSPTLAVGAAQSSMFAPVEHAERMLSLDNVFSLDELRDWCAKAQQGAGRPVRWL
TELKIDGLAINLRYEDGVLVSAATRGDGRVGEDVTVNAVRVAGIPERLTGSAHPALVEIR
GEVFIPVAAFEQLNALQAEMRERAVDEARARSRGFDEEKARRSAERRFPAFANPRNAASG
GLRQQLEKKDGLEAEAGRARLSSLRVFVHGIGAWEQPPVASQSEVYALLAEWGLPTSPYF
QTFDDIDGVLGFVAHYGEHRHDVEHEIDGIVVKVDELALHGELGATSRAPRWAIAYKYPP
EQVNTKLLDIVVSVGRTGRATPFAVMAPARVAGSVVRQATLHNQDVVKVKGVLIGDTVVL
RKAGDVIPEVLGPVVELRDGTEREFVMPAACPECGATLAPSKEGDIDLRCPNAKTCPAQV
RGRVEHIGSRGALDIEALGEVTAAALTQPDVPDEPPLRTEARLFDLTLDELVPIEVKVRD
AETGLVKEDDAGVAKTRAPFRRNPSAAEKKAGVHVGQPSAQALTLLDELEKAKTKELWRF
LVAFNIRHVGPVAARALAQWFGSVDAIRAAGRDELASVEGVGGIIADSLTEWFEVDWHRD
IVDRWQAAGAQLATPGHPGPGAAQAAGGVLDGLTVVATGSLDGYTREGAQEAIIQAGGKA
ASSVSKKTDFVAAGPGAGSKLAKAEELGVRILDAAQFRILVEQGPAALDAVVPDAG
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
gtgacggatgctgaaggggccgcagcgcccaccctcgacgacgcccgtgccgaagcaggt
gcgctgaccgagcgcatcctcggcgcccgcgacgcgtactacggccgcgacgccgagatc
gtcgacgacgcgacatatgacacgtggatgcggcgtctcgaagagctggagcgcctccac
cccgagctgcagagccaggactcgcccaccctcgccgtcggcgcggcgcagtcgtcgatg
ttcgcccccgtcgagcacgccgagcggatgctcagcctcgacaacgtgttctcgctcgac
gagctgcgcgactggtgtgcgaaggcgcagcagggagcggggcgtcccgtgcggtggctc
accgagctgaagatcgacgggctcgccatcaacctgcgctacgaagacggcgtcctcgtc
tcggcggcgacgcggggcgacgggcgggtgggcgaggacgtcacggtcaacgcggtgcgc
gtcgccggcatccccgagcggctgaccggcagcgctcatcccgcgctggtcgagatccgc
ggcgaggtgttcatcccggtcgccgcgttcgagcagctgaatgcgctgcaggccgagatg
cgcgagcgcgcggtcgacgaggcacgcgcccggtcgcgcggcttcgacgaggagaaggcg
cgccgcagcgccgagcgacgcttccccgcattcgccaatccgcgcaacgccgccagcggc
ggcctccggcagcagctcgagaagaaggacgggctcgaggcggaggcggggcgcgcgcgc
ctctcgtcgctgcgcgtgttcgtccacggcatcggcgcgtgggaacagccgccggtcgcc
tcgcagagcgaggtgtacgcgctgctcgccgaatgggggctgcccacgagcccgtacttc
cagaccttcgacgacatcgacggcgtgctcggtttcgtcgcgcactacggcgagcaccgc
cacgacgtcgagcacgagatcgacggcatcgtcgtgaaggtcgacgagctcgccctgcac
ggcgagctgggcgccacgagccgcgcgccacggtgggccatcgcgtacaagtacccgccc
gagcaggtgaacaccaagctcctcgacatcgtcgtctccgtcggccgcaccgggcgcgcc
acgccgttcgcggtgatggcccccgcgcgcgtcgccggatcggtggtgcgtcaggccacg
ctccacaaccaggacgtggtcaaggtgaagggcgtgctgatcggcgacacggtcgtcctg
cgcaaagccggcgatgtgatccccgaggtgctcggtcccgtggtcgagctgcgcgacggc
accgaacgcgagttcgtcatgcccgcggcgtgccccgagtgcggcgccaccctggccccc
tcgaaagagggcgacatcgacctgcggtgcccgaacgcgaagacctgccccgcacaggtg
cgcggacgcgtcgagcacatcggctcacgcggcgcactcgacatcgaggcgctcggcgag
gtcacggctgccgcactcacccagcccgacgtcccggatgagcccccgctgcgcaccgag
gcccgcctgttcgacctgaccctcgacgagctggtgccgatcgaggtgaaggtgcgcgac
gccgagaccgggctcgtcaaggaggacgacgcaggtgtcgccaagacgcgcgcccccttc
cgtcgcaatccgtccgcggcggagaagaaggcgggggtccacgtcggccagccgtccgcg
caggcgctcaccctgctcgacgagctcgagaaggcgaagaccaaggagctctggcggttc
ctcgtcgcgttcaacatccgccacgtcggtccggtcgctgcgcgcgccctcgcccaatgg
ttcggctcggtcgacgccatccgggcggccggccgcgacgagctggcgtcggtcgagggc
gtcggcgggatcatcgccgactcgctgaccgagtggttcgaggtcgactggcatcgcgac
atcgtcgaccgctggcaggccgccggcgcccagctcgcgacacctggtcaccccggtccg
ggtgccgcgcaggcggcgggcggcgtcctggacggcctcactgtcgtggccaccgggtcg
ctcgacggctatacccgggagggtgcgcaggaggcgatcatccaggccggaggcaaggcg
gcatccagcgtctcgaagaagaccgacttcgtcgcggcaggccccggcgccgggtcgaag
ctcgcgaaggccgaagagctcggcgtgcggatcctcgacgcggcgcagttccgcatcctc
gtcgagcaggggccggctgcgctcgacgccgtcgtgccggacgccggctga
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