Mycolicibacter terrae: 4434518_02687
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Entry
4434518_02687 CDS
T05465
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mter
Mycolicibacter terrae
Pathway
mter03030
DNA replication
mter03410
Base excision repair
mter03420
Nucleotide excision repair
mter03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mter00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
4434518_02687 (ligA)
03410 Base excision repair
4434518_02687 (ligA)
03420 Nucleotide excision repair
4434518_02687 (ligA)
03430 Mismatch repair
4434518_02687 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mter03032
]
4434518_02687 (ligA)
03400 DNA repair and recombination proteins [BR:
mter03400
]
4434518_02687 (ligA)
Enzymes [BR:
mter01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
4434518_02687 (ligA)
DNA replication proteins [BR:
mter03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
4434518_02687 (ligA)
DNA repair and recombination proteins [BR:
mter03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
4434518_02687 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
4434518_02687 (ligA)
MMR (mismatch excision repair)
DNA ligase
4434518_02687 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
4434518_02687 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
Zn_ribbon_Com
Motif
Other DBs
NCBI-ProteinID:
SNV82357
LinkDB
All DBs
Position
1:complement(2859552..2861609)
Genome browser
AA seq
685 aa
AA seq
DB search
MTPDLRRQWHDLAEEVREHQFRYYVKDAPIITDGEFDELFNALLALEDAYPELRAADSPT
QLVGGAGFTTDFAPAEHLERMLSLEDVFSPDELTAWAGRVAGEIGGDTTYLCELKVDGVA
LGLVYRDGRLISGATRGDGRVGEDVTLNARTIADVPEFLTADSEFPIPAVLEVRGEVYFR
LEDFETLNAGLVAEGKAPFANPRNSAAGSLRQKNPAITARRKLRMVCHGLGYTEGFNPAT
LHEAYTAMKAWGLPVSSHTARVDGMAAVAERITYWGEHRHDVEHEIDGVVVKVDDRALQR
RLGATSRVPRWAVAYKYPPEEAQTTLVDIRVSVGRTGRVTPFAYMTPVKVAGSTVSLATL
HNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGTEREFVMPTHCPECGTLLARA
KEADVDIRCPNSRSCPAQLRERVFHVAGRGAFDIEALGYEAATALLSAGVISDEGDLFTL
TEDDLLRTELFTTKGGALSKNGRQLLTNLDKAKSQPLWRVLVALSIRHVGPTAARALATE
FGSLEAITAASTEQLAAVEGVGPTIAAAVTEWFDVDWHRAIVDKWRAAGVRMADERDESI
ERTLEGLSIVVTGSLTGFSRDEAKEAIIARGGRAAGSVSKKTAYVVAGDAPGSKYDKAVE
LGVPVLDEDGFVRLLAEGPADDTTD
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
gtgaccccggatctccggcggcagtggcacgacctggccgaagaggtgcgcgaacaccag
ttccgctactacgtcaaagacgcgccgatcatcaccgacggcgaattcgacgagctgttc
aacgcactgctcgcactggaggacgcctacccggaactgcgggccgccgactcgccgacc
cagctggtgggcggggccggcttcaccaccgacttcgcaccggcagagcacctggaacgg
atgctgtcgctggaagacgtgttctcacccgatgagctgaccgcctgggcgggccgggtc
gccggtgagatcggcggcgacaccacctacctgtgcgagctcaaggtcgacggggtggcg
ctcggactggtgtatcgcgacggccggttgatcagcggcgccacccgcggtgacggccgg
gtcggcgaggatgtgacgctgaacgcgcggactatcgccgacgtccccgaattcctcacc
gccgacagcgaattcccgattccggcggtgctggaggtacgcggcgaggtgtacttccgg
ctggaggacttcgaaaccctcaacgccgggctggtcgccgagggcaaggcgccgttcgcc
aacccccgtaacagcgcggccggatcactgcgacagaagaacccggccatcaccgcccgg
cgcaaactgcggatggtctgccacggcctcggctacaccgagggattcaaccccgcgacc
ctgcacgaggcctacaccgcgatgaaggcctggggactgccggtctcatcgcacaccgcc
cgggtcgacggtatggccgcggtggccgaacgcatcacctactggggcgagcaccgccac
gatgtcgaacacgaaatcgacggtgtggtcgtcaaagtcgacgaccgggcactgcagcgc
cggctcggcgccacctcgcgggtgccccgctgggcggtggcctacaaatacccgccggag
gaggcgcagaccacgctggtcgacatccgggtcagtgtcgggcgcaccggccgggtcacc
ccgttcgcctacatgaccccggtcaaggtggccggctccacggtgagcctggccaccttg
cacaatgcctcggaggtcaagcgcaagggcgtgctgatcggtgacaccgtggtgatccgc
aaggccggtgacgtgatccccgaggtgctcggacccgtggtcgacctgcgtgacggcacc
gaacgcgagttcgtcatgccgacccactgcccggaatgcggaaccctgctggcgcgggcc
aaggaagccgacgtcgacatccgctgtcccaattcgcggtcctgcccggcccagctgcgc
gagcgggtgttccacgttgccggccgcggtgccttcgacatcgaggccctgggctacgaa
gcggcgaccgcgctgttgagcgccggcgtcatctccgacgagggcgatctgttcaccctc
accgaagacgacctgctgcgcaccgagttgttcaccaccaagggcggcgcgctgtccaag
aacggccggcaattgctgaccaacctcgacaaggccaagtcccaaccgctgtggcgggtg
ttggtggcattgtcgatccgccatgtcggcccgaccgccgcccgggcgctggcaaccgaa
ttcggcagcctggaggcgatcaccgcggcgtctaccgagcagctcgcggcggtcgagggc
gtcgggcccaccattgccgccgcggtcaccgaatggttcgacgtcgactggcaccgcgcg
atcgtcgacaagtggcgggcggccggggtgcggatggccgacgaacgcgacgagagcatc
gaacgcacgctggagggcctgagcatcgtcgtgacgggttcgctgaccggcttctcccgc
gatgaggccaaggaggcgatcatcgcgcgtggaggccgcgccgccgggtcggtgtcgaag
aagacggcctatgtcgtcgccggtgacgcgccggggtcgaagtacgacaaggccgtcgaa
ctcggggtcccggtcctcgacgaggacggtttcgtcaggctgctggccgagggcccggcg
gacgacacaacggattag
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