Micrococcus terreus: R3I42_00840
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Entry
R3I42_00840 CDS
T09505
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mteu
Micrococcus terreus
Pathway
mteu03030
DNA replication
mteu03410
Base excision repair
mteu03420
Nucleotide excision repair
mteu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mteu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R3I42_00840 (ligA)
03410 Base excision repair
R3I42_00840 (ligA)
03420 Nucleotide excision repair
R3I42_00840 (ligA)
03430 Mismatch repair
R3I42_00840 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mteu03032
]
R3I42_00840 (ligA)
03400 DNA repair and recombination proteins [BR:
mteu03400
]
R3I42_00840 (ligA)
Enzymes [BR:
mteu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
R3I42_00840 (ligA)
DNA replication proteins [BR:
mteu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R3I42_00840 (ligA)
DNA repair and recombination proteins [BR:
mteu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
R3I42_00840 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R3I42_00840 (ligA)
MMR (mismatch excision repair)
DNA ligase
R3I42_00840 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R3I42_00840 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
WOO99070
LinkDB
All DBs
Position
192956..195388
Genome browser
AA seq
810 aa
AA seq
DB search
MDPDLQPDAEEIPTGSLREEYEHLVDEVRRHRTAYYQNDAPEISDAEYDALYRRLEDLEA
MHPEIVANDSPTQEVGGEVSEAFAPVTHLARMYSLEDVFSVEELRTWYQRTAASIENIAP
GTTPQWLAEVKIDGLAVNLLYREGRLVRAATRGDGTTGEDVTHNVMTIGDIPQQLSGSGW
PEEMEVRGEVYISTADFRAFNEQRVEAGLAPFANPRNSAAGSLRQKDPAETAKRPLKMFV
HGIGAHTGLDAQSQHATYELLASWGLPVSPYTSLLTALEGTATKPGILEYIEQYGQQRHG
LVHEIDGIVVKVDSFALQRALGHTSRVPRWAAAYKYPPEEVHTTLLSIEVNVGRTGRVTP
YAVMEPVVVAGSTVSMATLHNQDVVKLKNVLIGDTVVLRKAGDVIPEVVGPVLPLREGKK
TVTGDGPLGADELREFVMPTHCPSCGTELAPAKEGDVDLRCPNAQSCPAQLTGRVEHLAS
RGAFDVEALGEEAATWLTNGPGPDPAKNGGRVQPEGPGVITSDAEVFDLADAEEKDPKAP
HAPEELNELQARLAEVQVWREKRTKDPETGKLVPSGQWELKPYFWTQGTAKKPSEPTANT
RRLFQELHKAKTQPLWRVLVALSIRHVGPTAARSLATAFGSMDALIQLVTQEDTEAARTR
LADVDGVGPIIADAVIEWFAEDWHRQIVERWRTAGVVMEDEQDPDMPRTLEGLTVVVTGS
LEGFSRDSAKEAIILRGGKASGSVSKKTDFVVAGENAGSKLDKAESLGVPVLDEAGFQAL
LAGGAEAVSGRTDEDLPDDGASPEVQEETS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
gtggacccggacctccagccggatgccgaggagatccccaccggctccctgcgggaggag
tacgagcacctcgtggatgaggtgcgccgccaccgcacggcgtactaccagaacgacgcc
ccggagatctccgacgccgagtacgacgccctgtaccggcggctcgaggacctggaggcg
atgcacccggagatcgtcgccaacgactcgcccacgcaggaggtcggcggtgaggtgtcc
gaggccttcgcgcccgtgacccacctggcccggatgtactccctggaggacgtgttctcg
gtggaggagctgcgcacctggtaccagcgcaccgccgcctcgatcgagaacatcgcgccc
ggaaccaccccgcagtggctggccgaggtcaagatcgacggactggccgtgaacctgctc
taccgcgagggcaggctggtccgcgcggccactcgcggtgacgggaccaccggcgaggac
gtcacgcacaacgtgatgaccatcggggacatcccacagcagctgagcggctcgggttgg
ccggaggagatggaggtgcgcggcgaggtctacatctccaccgccgacttccgggcgttc
aacgaacagcgggtggaggccgggctggccccattcgccaacccccgcaactccgccgcc
ggatccctgcgccagaaggaccccgcggagaccgccaagcgtccgctgaagatgttcgtg
cacggcatcggcgcgcacaccggactggacgcccagagccagcacgccacctacgagctg
ctcgcctcctggggcctgcccgtcagcccctacacctccctgctcaccgcgctcgagggc
accgccacgaagcccgggatcctggagtacatcgagcagtacgggcagcagcgccacggg
ctggtccacgagatcgacgggatcgtggtcaaggtcgactccttcgccctgcagcgcgcc
ctgggccacacctcccgcgtcccacgctgggccgccgcctacaagtacccgccggaggag
gtccacaccacgctgctctccatcgaggtcaacgtgggccgcaccggccgggtcaccccc
tacgcggtgatggagcctgtggtggtggccggatccaccgtctccatggccaccctgcac
aaccaggacgtggtcaagctcaagaacgtgctgatcggggacaccgtggtcctgcgcaag
gccggggacgtgatccccgaggtcgtggggccggtgctgcccctgcgcgagggcaagaag
accgtgaccggagacggcccgctgggggcagacgagctgcgcgagttcgtcatgcccacc
cactgcccctcctgcggcaccgagctggccccggccaaggagggcgacgtggacctgcgc
tgccccaacgcccagtcctgccccgcacagctgaccggacgcgtggagcacctggcctcc
cgcggtgccttcgacgtcgaggccctgggcgaggaggcggccacctggctgaccaacggc
cccggcccggaccctgcgaagaacggcggacgcgtccagccggagggccccggcgtgatc
acctcggatgcagaggtgtttgacctggcggacgcggaggagaaggaccccaaggctccc
cacgcccctgaggagctcaacgagctgcaggcccgtctcgccgaggtccaggtctggcgg
gagaagcgcaccaaggacccggagaccgggaagctcgtcccctcggggcagtgggagctc
aagccgtacttctggacccagggcaccgccaagaagccctccgagcccaccgccaacacc
cggcgcctgttccaggagctgcacaaggccaagacccagccgctctggcgcgtgctcgta
gccctgtccatccggcacgtgggtcccaccgccgcgcgctcgctggccaccgcgttcgga
tccatggacgccctgatccagctggtcacccaggaggacaccgaggccgcgcgcacccgc
ctggcggatgtggacggtgtgggcccgatcatcgccgacgccgtcatcgagtggttcgcc
gaggactggcaccggcagatcgtggagcgctggcgcacggccggtgtggtgatggaggac
gagcaggacccggacatgccccgcaccctggagggcctgaccgtggtggtcacgggctcc
ctggagggcttcagccgcgactccgccaaggaggccatcatcctgcgcggtggcaaggcc
tcgggctcggtgtccaagaagacggacttcgtggtggccggggagaacgccggctccaag
ctggacaaggccgagtccctgggcgtcccggtgctggacgaggccgggttccaggccctg
ctggccggcggcgccgaggcggtcagcggccgcacagacgaagaccttcccgacgacggc
gcctcgcctgaggtgcaggaggagacctcatga
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