Microvirga terrae: HPT29_007495
Help
Entry
HPT29_007495 CDS
T09145
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mtez
Microvirga terrae
Pathway
mtez03030
DNA replication
mtez03410
Base excision repair
mtez03420
Nucleotide excision repair
mtez03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mtez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPT29_007495 (ligA)
03410 Base excision repair
HPT29_007495 (ligA)
03420 Nucleotide excision repair
HPT29_007495 (ligA)
03430 Mismatch repair
HPT29_007495 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mtez03032
]
HPT29_007495 (ligA)
03400 DNA repair and recombination proteins [BR:
mtez03400
]
HPT29_007495 (ligA)
Enzymes [BR:
mtez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HPT29_007495 (ligA)
DNA replication proteins [BR:
mtez03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HPT29_007495 (ligA)
DNA repair and recombination proteins [BR:
mtez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HPT29_007495 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPT29_007495 (ligA)
MMR (mismatch excision repair)
DNA ligase
HPT29_007495 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPT29_007495 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
UVF20960
LinkDB
All DBs
Position
1584880..1587039
Genome browser
AA seq
719 aa
AA seq
DB search
MPPRSTASETPVDHLTPDDARTEHESLGAEIKEHDRRYYEEDAPTVSDAEYDALRKRYEA
LEDQFPELKTPESLTQKVGSKVSEKFGKIRHRVPMLSLANGFADEEVEEFVERIRRFLQW
KPDAPLAFTAEPKIDGLSLSLRYENGRLVSAATRGDGQVGEDVTNNARTVGDIPHRLKGS
EVPDIFEVRGEVYLSHEDFAAINARQEAAGRALFANPRNAAAGSLRQLDASITASRPLRF
FAYAWGEVSAMPATTQHGMMECFRSFGLTVNPLTRRCPSVAEMLDHYHAIETDRANLGYD
IDGVVYKVDELSLQQRLGFVSRSPRWALAHKFPAQKAVTVLEDIEINVGRTGSLNPIARL
KPVTVGGVVVSNATLHNEDYIKGIGGNGEKIRNGIDIRIGDTVVINRAGDVIPKVLDVVL
EKRPADAQPYAFPTTCPACGSHAVREVNPRTAKEDAVRRCTGGLICPAQARERLKHFVSR
NAFDIEGMGEQRIDEFYEEGLVQRPQDIFTLQARNARSLKRLENREGWGETSAKNLFAAI
EARRTIALNRFIFALGIPHIGETSARLLARHFGTFEHLRETAKAAADPASDAHAELTAIG
GIGPVVAEAVVEFFKERHNEEMLDALLDQVTVEAMEAPAMANSPVAGKTVVFTGSLEQMT
REEAKAMAERLGAKVAGSVSKKTDIVVAGPGAGSKLAKAAELGLQVMDEDGWFALVGRG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgcccccacgcagcaccgcctccgagaccccagtcgaccatctgacgcccgatgacgcg
cgcaccgagcacgagtcgctcggcgccgagatcaaggagcacgaccggcgctattacgag
gaggacgccccgaccgtctcggatgccgaatacgacgctctgcgcaagcgctacgaggcc
ctggaggatcagttcccggaactgaagacccccgagagcctgacccagaaggtcggctcc
aaggtgtcggagaaattcggcaagatccgtcaccgggtgccgatgctgtcgctcgccaac
ggcttcgccgacgaggaggtggaggagttcgtcgaacgcatccgccgcttcctgcaatgg
aagcccgatgcgccgctcgccttcacggcggagccgaagatcgacggtctgtccttgagc
ctgcgttacgagaacggcaggctcgtgtccgccgccacccggggcgacggccaggtgggc
gaggacgtgacgaacaacgcccgtacggtgggcgacattccgcaccggctcaagggctct
gaggttcctgacatcttcgaggtgcgcggcgaggtctatctctcgcacgaggatttcgcc
gccatcaacgcgcgccaggaggcggccggcagagcgctcttcgccaatccgcgcaacgcg
gcggcgggcagcctgcgtcagctcgatgcgtcgatcaccgcctcgcgcccgttgcggttc
ttcgcctatgcctggggcgaggtgagcgccatgccggcgacgacgcaacacggcatgatg
gagtgcttccgcagcttcggcctcacggtcaatccgctcacccgccgctgccccagcgtc
gccgagatgctcgatcactaccacgccatcgagaccgaccgcgccaatctcggctacgac
atcgacggcgtcgtctacaaggtcgacgagctgagcctgcagcagcgtctcggcttcgtg
tcccgctcgccgcgctgggcgctcgcgcacaagttcccggcccagaaggctgtgacggtg
ctcgaggatatcgagatcaacgtgggccgcacggggtcgctcaatcccatcgcgcgcctg
aagcccgtcaccgtcggcggcgtcgtggtgtcgaacgcgaccctgcacaacgaggattac
atcaagggcatcggcggcaacggcgagaagatccgcaacgggatcgacatccgcatcggc
gacacggtcgtcatcaaccgggccggcgacgtgatccccaaggtactcgacgtggtgctg
gagaaacgccccgccgacgcgcagccctatgccttcccgaccacatgcccggcctgcggc
agccatgcggtgcgcgaggtcaatcctcgcacggctaaggaggatgcggtgcgccgctgc
accggcggcctcatctgcccggcgcaggcccgcgagcgcctcaagcacttcgtttcgcgc
aatgccttcgacatcgagggcatgggcgagcagcgcatcgacgagttctacgaggaaggg
ctcgtccagcgcccgcaggacatcttcaccctgcaggcccggaatgcccgcagcctcaag
cggctggagaaccgggaaggctggggcgagacgagcgcgaagaatctgttcgctgccatc
gaggcgcgccgcacgatcgcactgaaccgcttcatcttcgccctcggcatcccgcatatc
ggcgaaacctcggcgcggctgctcgcgcgccatttcggcaccttcgagcacctgcgcgag
accgcgaaagccgcagccgatcccgcatcggacgcgcatgcggaactcaccgccatcggc
ggcatcgggccggtggtggcagaggcggtcgttgagttcttcaaggaacggcacaacgag
gagatgctcgatgcgctgctcgatcaggtgaccgtcgaggccatggaagcgccggccatg
gcgaactcccccgtggcgggcaagaccgtggtgttcaccggctccctcgagcagatgacc
cgcgaggaggccaaggctatggccgagcgcctcggcgccaaggtggcgggctccgtgtcc
aagaagaccgacatcgtggtggccggtcccggagccggctcgaagctcgccaaggcggcc
gagctcggactccaggtcatggacgaggacggctggttcgccctcgtcggccgggggtga
DBGET
integrated database retrieval system
