Methylophaga thalassica: VSX76_10565
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Entry
VSX76_10565 CDS
T09743
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mtha
Methylophaga thalassica
Pathway
mtha03030
DNA replication
mtha03410
Base excision repair
mtha03420
Nucleotide excision repair
mtha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mtha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VSX76_10565 (ligA)
03410 Base excision repair
VSX76_10565 (ligA)
03420 Nucleotide excision repair
VSX76_10565 (ligA)
03430 Mismatch repair
VSX76_10565 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mtha03032
]
VSX76_10565 (ligA)
03400 DNA repair and recombination proteins [BR:
mtha03400
]
VSX76_10565 (ligA)
Enzymes [BR:
mtha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VSX76_10565 (ligA)
DNA replication proteins [BR:
mtha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VSX76_10565 (ligA)
DNA repair and recombination proteins [BR:
mtha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VSX76_10565 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VSX76_10565 (ligA)
MMR (mismatch excision repair)
DNA ligase
VSX76_10565 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VSX76_10565 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Neugrin
Motif
Other DBs
NCBI-ProteinID:
WVI84218
LinkDB
All DBs
Position
1:complement(1847345..1849363)
Genome browser
AA seq
672 aa
AA seq
DB search
MTTSIDITQRAAELRELLNHYSYQYYVLDNPEVPDAEYDRLFRELQAIESEYPQLLSADS
PTQRVGGQALDKFDEVQHSIPMLSLDNVFDQQELSAFDKRVRDWLNTDKAQTYAAEPKLD
GLAISIRYENGILVQAATRGDGTTGEDVTANVRTINSVPLKLQGEHIPAVVEIRGEIFMP
KAGFEKLNQSQLANNKKPFVNPRNAAAGSLRQLDSKITASRPLEIYCYGIGVIEGMPRPN
SHSEAMTLIAGWGCRISPELKVLEGLEACQRYIDDLALRRDNLEYDIDGVVFKVDDTALQ
ERLGFVSRAPRWAIAYKFPAQEEMTTVEDIEIQVGRTGALTPVARLKPVFVGGVTVSNAT
LHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVKAIISKRPDDAREFVMPTACPICGSDVER
EEGEAVSRCSGGLFCAAQRKEAIKHFASRKALDIDGLGDKLVEQLVDAGHIKDVADLFLL
DVDTIASLERMGQKSAENLVNALNAAKATRFQRFLYALGIREVGEATARALALHYSSLEE
LMQASSESLMEIEDVGPVVAHHIETFFQQSHNREVIERLLSVGIHWPTEEKKQTNTALSG
KTIVLTGTLQTLSRSEAKEKLLALGAKVAGSVSKKTDYVVAGADAGSKLTKAESLGIEVV
DEATLQQWLIQE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgactacttcaattgatattacccagcgagctgctgagttacgcgagcttcttaatcat
tacagctatcagtattacgttttagataatcccgaagtaccggatgctgaatatgatcgt
ttatttcgtgaactacaagcgatagagagcgaatatccgcagctattatctgctgattcg
cccacacagcgcgtgggggggcaggcgctggataagtttgatgaagttcagcattcgatt
ccgatgttgtctttagataatgtctttgaccagcaagagctaagtgcttttgataaacgt
gttcgtgactggttaaatactgataaagcccaaacttacgcagcagagcctaaactcgat
ggcctggctatcagtattcgttatgagaacggtattttagttcaggcggcaacccgcggt
gatggcacaactggagaggatgtgacggccaatgttcgcaccatcaattcggtgccatta
aagctgcaaggcgagcatattccagcggttgttgagattcgtggcgagatttttatgccc
aaggccggctttgaaaagttgaaccagtctcagttggcaaataataaaaaaccgttcgtg
aaccctcgcaatgcagctgccggatcattaagacaactggattccaagattaccgcatcc
agaccgctggaaatttactgctatggtatcggcgtgattgaaggtatgcctcgccccaac
agtcattctgaagcgatgacattgattgctggttggggatgtcgtatttctcctgaacta
aaagtgctagaaggcttagaagcctgccagcgatatattgatgacctggccttgcgtcgg
gataaccttgaatatgatatcgatggtgtggtgtttaaagttgatgacaccgcattgcag
gaacgacttggttttgtgtcgcgggcgccacggtgggctattgcctataaatttcctgca
caggaagagatgaccacggttgaagatattgaaattcaggtcggtcgcacaggtgcatta
acgcctgtagcccgattgaaaccggtgtttgtcggtggtgttacggtgtccaatgcgaca
cttcacaatgaagatgaaatacgccgtaaagatgtccgcatcggtgataccgttattgtg
cgacgagccggcgatgtgattcctgaagtcgtgaaagcaattatcagtaagcgtcctgat
gatgcacgtgagtttgttatgccaacggcttgtcctatttgtggctcggatgtggagcgg
gaagagggtgaagcggtatctcgttgtagcggtggtttgttttgtgcggcacagcgtaaa
gaagcgattaaacattttgcctcaagaaaagcattagatattgatggtctgggtgataag
ttggttgagcaacttgtggatgcaggccatatcaaagatgtggcagatttgtttttactg
gatgtcgatactatcgccagtctggaacgcatgggacaaaaatctgctgaaaacctggtt
aatgcgctgaatgcggctaaagcaacacgattccagcgctttctttatgcattaggcatt
cgggaagtcggtgaagccacagcacgcgctctagcattacattactcgtcgctggaagaa
ctgatgcaggcgtcttcagaaagtttgatggagattgaagatgtagggccagtagttgcc
catcatattgagacattttttcagcaatcacataatcgtgaggtgattgagcgtctgttg
agcgtgggtattcactggccaacggaagagaaaaaacaaaccaatactgcgctaagtggt
aagacaattgttttaaccggaacgctacagaccttatcccgcagtgaagcgaaagaaaag
ttgttggcacttggcgcaaaagtcgctggcagtgtgtcgaaaaaaacagattatgtggtt
gctggcgctgacgctggttcaaagctgacaaaagcagaatcacttggtattgaagtggtt
gatgaagcaacattacaacagtggttaatacaggaataa
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integrated database retrieval system
