Microbulbifer thermotolerans: A3224_09405
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Entry
A3224_09405 CDS
T04393
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mthd
Microbulbifer thermotolerans
Pathway
mthd03030
DNA replication
mthd03410
Base excision repair
mthd03420
Nucleotide excision repair
mthd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mthd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A3224_09405 (ligA)
03410 Base excision repair
A3224_09405 (ligA)
03420 Nucleotide excision repair
A3224_09405 (ligA)
03430 Mismatch repair
A3224_09405 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mthd03032
]
A3224_09405 (ligA)
03400 DNA repair and recombination proteins [BR:
mthd03400
]
A3224_09405 (ligA)
Enzymes [BR:
mthd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A3224_09405 (ligA)
DNA replication proteins [BR:
mthd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A3224_09405 (ligA)
DNA repair and recombination proteins [BR:
mthd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A3224_09405 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A3224_09405 (ligA)
MMR (mismatch excision repair)
DNA ligase
A3224_09405 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A3224_09405 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
AphA_like
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AMX02773
UniProt:
A0A143HM62
LinkDB
All DBs
Position
complement(2229517..2231556)
Genome browser
AA seq
679 aa
AA seq
DB search
MTDKKIPSEIQQRAQELHEILQRANHMYYVLDNPELPDSEYDRRLRELQALEQEYPQLIT
PDSPTQRVGAEPLKAFAEVHHEVPMLSLDNAFSDEELREFDRRVRERLNSSEPVEYACEP
KLDGIAVSLLYRGGLLERAATRGDGTTGEDITRNVRTIGSVPLRLLGGDPPAVLEVRGEI
YMPKAGFAELNKKAAAAGEKLFVNPRNAAAGSLRQLDSRITAQRPLEFCVYGVGLVEGAA
LPERHTEILRQLSRWGFRINSEMSVARDIGECISYHRKLGEKREALAYDIDGIVFKVNDI
ALQQRLGFVARAPRWAMAYKFPAQEEMTELLDVEFQVGRTGAVTPVARLKPVFVGGVTVS
NATLHNRDEIERLGVKIGDTVVVRRAGDVIPQVVSVVASKRPRDARTIVFPTHCPVCGSP
VESAPGEAVARCSGGLICSAQRKQAIKHFASRKAMDIEGLGDKLVEQLVDEGLLHSVSGL
YHLQFEQLVALERMGQKSAQNLLDALERSKHTTLSKFLYALGIREVGEATARNLAKHFGD
LAPLMQADEAELQEVEDVGPVVAHFVAEFFRQPHAQEEIEALRQAGIFWEPEEQGGEAQP
LAGQTWVLTGKLETLSRSEAKDHLQRLGAKVAGSVSANTDTVVAGPGAGSKLNKARELNI
PTMDEGEFLAMLRGRGIAI
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgacggataaaaaaattcccagcgaaatacagcagcgcgcccaggagctgcacgaaatt
ctccagcgcgccaatcacatgtactacgtactcgacaacccggaactgccggattccgaa
tacgaccgtcgcctgcgcgagctacaggccctggagcaagagtatccgcaactgatcacc
ccggattcccccacgcagcgcgttggcgcagagccgttgaaagcgtttgcggaggtgcac
cacgaggtgcccatgctctccctggacaatgcgttcagtgatgaggagttgcgggagttc
gaccgccgtgtgcgcgaacgcctgaatagcagtgagccggtggaatatgcctgtgagccc
aagttggacggcattgccgttagccttctgtaccgcggtggtcttctcgaacgcgcggca
acccgtggggacggcacaacaggagaggacattacccgcaatgtgcgcaccattggctcg
gtgccgttgcgcctgctgggcggcgatccgcccgcggttctcgaagtgcgtggagaaatc
tacatgcccaaagcgggttttgcagaattgaacaaaaaggcggcagcggctggagaaaag
cttttcgtcaatccgcgcaatgccgccgccggcagccttcgacagctggattcgcggatc
actgcacagcgtccgctcgaattctgtgtttacggtgtcggcctggtagagggcgccgcc
ttgcctgagcggcatacggaaattctacggcagctcagtcgctgggggtttcgcatcaat
agcgaaatgtcggtggcaagggacatcggtgaatgtatttcctatcaccgcaaactcggc
gagaagcgcgaagcgttggcctacgacatagacggcatcgtgttcaaagtgaacgatatc
gccctgcaacagcgcctggggtttgtcgccagggcaccgcgctgggccatggcctataaa
tttcccgcccaggaggaaatgaccgaactgctggatgtggagtttcaagtgggtcgcact
ggcgctgtgacaccggtggcgcgcttgaagccggtctttgtcggcggcgtgacagtatct
aatgccaccttgcacaatcgcgatgaaattgagcgcctcggtgtcaaaatcggcgataca
gtcgtagtccgccgagctggtgacgtaatcccacaggtggtctcggtagtggcgagcaaa
cgcccgcgggatgcgcgtaccatcgtatttccaacgcattgcccggtttgtggttcgcct
gtggagtccgcccccggagaggcggtggcgcggtgcagcggtggtttgatctgtagcgcg
cagcgcaaacaggcgatcaagcacttcgcttcgcgcaaggcgatggatatcgaaggactc
ggagacaagctggtggagcaactggtggatgaggggttgttgcactctgtttccggtctg
tatcacttgcaattcgagcagctggtggcgctcgagcgcatggggcaaaaatcagcgcag
aacctgctcgatgccctggagcgcagcaaacacacaaccctgtcgaaatttctctacgcg
ctgggcattcgcgaagtgggggaggccactgcgcgcaacctcgccaagcactttggcgat
ctggccccactgatgcaagccgatgaagcggaattgcaagaagtcgaggatgtagggccg
gtggtggcgcactttgtcgccgagtttttccgccagccacacgcccaggaggaaatagag
gcgctgcgtcaagccggtatcttttgggaaccggaggaacagggcggcgaggcgcagccg
cttgcgggccagacctgggttttgaccggcaagctggaaacgctgtcgcgcagtgaagcc
aaggaccatctccagcgtctcggtgccaaggtggccggtagtgtttccgccaacaccgat
acagtcgtcgctggccccggtgccggttcaaagctgaataaagctcgggagctgaatatc
cccacgatggatgagggtgaattcctagccatgttgcggggccgcggcatcgccatttag
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