Mixta theicola: C7M52_00601
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Entry
C7M52_00601 CDS
T06402
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mthi
Mixta theicola
Pathway
mthi03030
DNA replication
mthi03410
Base excision repair
mthi03420
Nucleotide excision repair
mthi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mthi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C7M52_00601 (ligA)
03410 Base excision repair
C7M52_00601 (ligA)
03420 Nucleotide excision repair
C7M52_00601 (ligA)
03430 Mismatch repair
C7M52_00601 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mthi03032
]
C7M52_00601 (ligA)
03400 DNA repair and recombination proteins [BR:
mthi03400
]
C7M52_00601 (ligA)
Enzymes [BR:
mthi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C7M52_00601 (ligA)
DNA replication proteins [BR:
mthi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C7M52_00601 (ligA)
DNA repair and recombination proteins [BR:
mthi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C7M52_00601 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C7M52_00601 (ligA)
MMR (mismatch excision repair)
DNA ligase
C7M52_00601 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C7M52_00601 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
HHH
DZR_2
DUF4874
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QHM74665
LinkDB
All DBs
Position
654429..656456
Genome browser
AA seq
675 aa
AA seq
DB search
MESVQDKITELRTTLRHHEYLYHVLDAPEIPDAEYDRLMRELRALEEQHPDLITADSPTQ
RVGAAPLTAFEQVRHEVPMLSLDNVFDEAGYLAFNKRVQDRLKSSDEITFCCELKLDGLA
VSLLYEDGLLVRAATRGDGTTGENITANVRTIRAIPLRLHGDNIPARLEVRGEVFMNQSG
FEKLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLVEGGELPHSHW
ERLQQFKAWGIPVSDRIRLSHSAEEVLAFYHQVEKDRPALGFDIDGVVIKVDSQELQDRL
GFVARAPRWAVAFKFPAQEQLTTVRDVEFQVGRTGAITPVARLEPVQVAGVMVSNATLHN
ADEIARLGLRIGDRVVIRRAGDVIPQVVNVVESERDSDTREVVFPSRCPVCGSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKTPADLFRLSAV
TLTGLERMGPKSAQNVVDALEKAKATTLPRFLYALGIREVGEATAVNLANHFGSLEKIMD
ADLEALIAVQDVGKVVAAHLRNFMEEESNREVIRQLVEDIGIHWPEIIPVNVEELDSPFA
GKTVVLTGSLSIMSRDEAKERLSALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIAV
IDEAEMIRLLDAAHG
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggaatccgtacaagacaaaattaccgagctgcgaaccacgcttcgtcatcatgaatat
ctttatcacgtgttggacgcgccggaaatccccgatgcggagtacgatcgcctgatgcgt
gaactgcgcgcgctggaagagcagcatcccgatctgatcacggcggattcgccaacccag
cgcgtcggcgccgcgccgctgacggcgtttgagcaggtgcgccatgaagtgccgatgctg
tcgcttgacaacgtattcgatgaggcgggctacctggcgtttaacaagcgcgtgcaggat
cgcctgaaaagcagcgatgagatcactttctgctgcgaactgaagctggatgggctggcg
gtcagcctgctgtatgaggatggcctgctggtgcgcgccgccacgcgcggcgacggcact
accggcgaaaatattaccgccaacgtgcgtaccatccgcgccattccgctgcgcctgcat
ggcgacaatatcccggcccggctggaagtgcgcggcgaagtatttatgaaccaaagcggc
ttcgaaaagctgaatgaagaagcgcgccgcaccggcggcaaggtgttcgccaatccgcgt
aacgcagcggcgggatcgctgcgccagctcgatccgcgcattacggcgaagcgtccgctt
acctttttctgttacggcttcgggctggttgagggcggcgaactgccgcacagccactgg
gagcggttgcaacagtttaaagcctggggaattccggtcagcgatcgcattcgcctcagc
cacagcgcggaagaggtgctggctttttaccatcaggtagaaaaggatcgcccggcgctg
ggatttgatatcgatggcgtggtgatcaaggtagattcgcaggagctgcaggatcggctg
ggcttcgtggcgcgcgcgccgcgctgggccgtcgcctttaagtttccggcgcaggagcag
ctcaccacggtgcgcgacgttgagtttcaggtgggacgtaccggcgccattacgccggta
gcgcggctggagccggtgcaggtggcgggcgttatggtcagcaacgcgacgctgcacaac
gcggatgaaattgcccgtctggggctgcgcatcggcgaccgcgtggtaatccgccgtgcg
ggcgacgtcatcccgcaggtagtcaacgtggtggaatcagagcgcgacagcgatacgcgt
gaagtggtgttccccagccgctgcccggtatgcggttcggacgtagagcgcgtcgaggga
gaggcagtcacgcgttgtaccggcgggctgatctgcggcgcccagcgtaaagaggcgtta
aagcatttcgtttcacggcgcgcgctggatgtcgaaggcatgggcgataaaattatcgac
cagctggtagagaaagagtatgtgaaaacgcccgccgatctgttccgcctcagcgccgtg
acgctgaccgggctggagcgcatggggcctaaatcggcgcagaacgtagtggacgcgctg
gagaaggcgaaggccaccacgctgccgcgcttcctttatgcgctgggcatccgtgaagtt
ggcgaagcgacggcggtcaatctggcgaaccatttcggctcgctggaaaagatcatggat
gccgatctggaggcgctgattgccgtgcaggacgttggcaaggttgtggcggcgcatctg
cgtaactttatggaagaagagagcaaccgcgaggtaatccgccagctggttgaggatatc
ggcatccactggccggagattatcccggttaatgtcgaagagctggatagcccgttcgct
ggaaaaaccgtggtgctgaccggttcgctgagcattatgtcgcgcgacgaggcgaaagag
cgtcttagcgcgctgggggcgaaggttagcggcagcgtatcgaagaaaaccgatctggtg
atcgccggcgaggccgccggctccaagctggcgaaagcgcaggagctggggatcgcggta
attgacgaagcggagatgattcgcctgttggatgccgcgcatggataa
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