Mycolicibacterium thermoresistibile: 4412656_01524
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Entry
4412656_01524 CDS
T05542
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mthn
Mycolicibacterium thermoresistibile
Pathway
mthn03030
DNA replication
mthn03410
Base excision repair
mthn03420
Nucleotide excision repair
mthn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mthn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
4412656_01524 (ligA)
03410 Base excision repair
4412656_01524 (ligA)
03420 Nucleotide excision repair
4412656_01524 (ligA)
03430 Mismatch repair
4412656_01524 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mthn03032
]
4412656_01524 (ligA)
03400 DNA repair and recombination proteins [BR:
mthn03400
]
4412656_01524 (ligA)
Enzymes [BR:
mthn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
4412656_01524 (ligA)
DNA replication proteins [BR:
mthn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
4412656_01524 (ligA)
DNA repair and recombination proteins [BR:
mthn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
4412656_01524 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
4412656_01524 (ligA)
MMR (mismatch excision repair)
DNA ligase
4412656_01524 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
4412656_01524 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
HHH_8
Motif
Other DBs
NCBI-ProteinID:
SNW17715
LinkDB
All DBs
Position
1:1627129..1629228
Genome browser
AA seq
699 aa
AA seq
DB search
MPPDDPAAALAEQSEAGPDADLRRRWQELADEVREHQFRYYVRDAPIISDAEFDELFREL
QALEEAHPELRTPDSPTQLVGGAGFTTDFAPAEHLERMLSLDNVFAPEELAAWAERIRAE
IGDDPHYLCELKIDGVALSLVYRDGRLVRAATRGDGRVGEDVTLNARTIADIPHRLSGTA
RYPVPKVLEVRGEVFFRIADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRKL
RMICHGFGRVEGFAPDSLHEAYLAFKEWGLPVSEHTTVVQGLPAVEERIAYWGEHRHEVD
HEIDGVVVKVDKVALQRRLGATSRAPRWAVAYKYPPEEAQTRLLDIRVNVGRTGRVTPFA
YMEPVKVAGSTVSLATLHNAAEVKRKGVLIGDTVMIRKAGDVIPEVLGPVVELRDGTERE
FVMPTECPECGTPLAPEKEGDADIRCPNSRSCPAQLRERVFHVASRGALDIEGLGYEAAT
ALLEAGVIADEGDLFDLTEDDLLRTEFFTTKNGALSANGKRLLANIAKARNQPLWRVLVA
LSIRHVGPTAARALATEFGSLDAIIAASEQELAAVDGVGPTIAAAVKEWFTVDWHRTIVD
KWRAAGVRMADERDTSIERTLEGVTVVVTGSLTGFSRDEAKEAIIARGGKASGSVSKKTD
FVVAGDSPGSKYDKAVELGVPILDEDGFRRLLAEGPAGV
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
gtgccgcccgacgatccggcggcggcgctcgccgaacagtccgaggccggcccggacgcc
gacctgcgtcggcgctggcaggaactggccgatgaggtccgcgagcatcagttccgctac
tacgtgcgggacgcgccgatcatctccgacgccgagttcgacgagctgttccgggagttg
caggcactcgaggaggcgcatccggagctgcggacaccggattcgcccacgcaactggtc
ggcggcgccgggttcaccaccgacttcgccccggccgagcatttggagcggatgctcagc
ctggacaacgtcttcgcgcccgaggagttggccgcctgggctgagaggatccgcgccgag
atcggtgacgacccgcattatctgtgtgagctgaagatcgacggggtcgcgctgtcgttg
gtctaccgcgacggccggttggtgcgcgcggccacccgcggcgacggccgcgtcggtgag
gacgtcacgctcaacgcccgcaccatcgctgacatcccgcatcggctgagcggcaccgcg
aggtatccggtgcccaaggtgctggaggtgcggggggaggtgttcttccggatcgccgac
ttcgaggaactcaacgccgggctggtcgccgaggggaaaccgccgttcgccaacccgcgc
aacagcgcggccggctcgctgcggcagaagaacccggcggtgaccgcccggcgcaagctg
cggatgatctgccacgggttcggccgggtggagggtttcgcaccggattccctgcacgag
gcgtatctggccttcaaggagtgggggctgccggtgtccgagcacaccaccgtcgtgcag
ggcctgccggcggtcgaggaacgcatcgcctactggggtgagcaccgccacgaggtcgat
cacgaaatcgacggtgtggtggtcaaagtcgacaaggtggcgttgcagcggaggctcggc
gccacctcgcgggcgccgcgctgggcggtcgcctacaagtacccgccggaggaggcgcag
accagactgctcgacatccgggtcaacgtgggccgcaccggacgggtcacgccgttcgcc
tacatggagccggtgaaggtggcggggtcgacggtcagtctggcgaccctgcacaacgcc
gccgaggtgaaacgcaaaggcgtgctgatcggcgacaccgtgatgatccgcaaggccggc
gacgtcatcccggaagtgctcgggccggtggtggagttgcgggacggcaccgaacgcgag
ttcgtgatgcccaccgaatgcccggagtgcggcacaccgctggcgccggagaaggaaggc
gacgccgacatccggtgtccgaactcgcgcagctgcccggcgcagttgcgggagcgggtg
ttccacgtggcctcccggggcgcgctggacatcgaggggctcggctatgaggcagccacc
gcgctgctggaggccggggtgatcgccgacgagggcgacctgttcgacctgaccgaggac
gatctgctgcgcaccgaattcttcaccaccaagaacggtgcgttgtccgccaacgggaaa
cggctgctggccaacatcgccaaggcccgcaaccaaccgctgtggcgggtgctggtggcg
ctgtcgatccggcacgtcggcccgaccgcggcacgcgcgctggccaccgaattcggcagt
ctggacgccatcatcgcggcatccgagcaggaactggccgcggtcgacggtgtgggcccc
accatcgccgccgcggtcaaggaatggttcaccgtcgactggcaccgcacgatcgtcgac
aaatggcgggcggccggggtgcggatggccgatgagcgcgacaccagcatcgaacgcaca
ctggaaggtgtgaccgtcgtggtcaccgggtcgttgaccggattctcccgcgacgaggcc
aaggaggcgatcatcgcccgcggtggaaaggcgtccgggtcggtgtcgaagaagaccgac
ttcgtggtggccggcgactcgcccggatccaagtacgacaaggcggtcgaactgggggtc
ccgatcctcgacgaggacggtttccgccggctgctggccgaagggccggcgggcgtctga
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