Neomoorella thermoacetica DSM 2955: MOTHA_c21350
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Entry
MOTHA_c21350 CDS
T06429
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mthz
Neomoorella thermoacetica DSM 2955
Pathway
mthz03030
DNA replication
mthz03410
Base excision repair
mthz03420
Nucleotide excision repair
mthz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mthz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MOTHA_c21350 (ligA)
03410 Base excision repair
MOTHA_c21350 (ligA)
03420 Nucleotide excision repair
MOTHA_c21350 (ligA)
03430 Mismatch repair
MOTHA_c21350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mthz03032
]
MOTHA_c21350 (ligA)
03400 DNA repair and recombination proteins [BR:
mthz03400
]
MOTHA_c21350 (ligA)
Enzymes [BR:
mthz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MOTHA_c21350 (ligA)
DNA replication proteins [BR:
mthz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MOTHA_c21350 (ligA)
DNA repair and recombination proteins [BR:
mthz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MOTHA_c21350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MOTHA_c21350 (ligA)
MMR (mismatch excision repair)
DNA ligase
MOTHA_c21350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MOTHA_c21350 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
HHH_8
BRCT_2
HHH_3
RNA_pol_A_CTD
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AKX97471
UniProt:
A0A1D7XDN6
LinkDB
All DBs
Position
complement(2091758..2093887)
Genome browser
AA seq
709 aa
AA seq
DB search
METRRCYPGKFSFQELAESRWVTICVVGHSSGCTGNIISGGIGMDLAAARQRVEELRRLI
EEHNYRYYVLDQPSISDREYDALMQELIALEEAYPELRTPDSPSQRVGGAPREEFNQVRH
PQVLLSLNDAFNEGDLLEFDRRVRDLAGRPVEYVIEAKIDGLAVALTYRDGLFTLGATRG
DGQVGEEVTANLKTIPALPLRLRRPLPFLVVRGEVYMPKVAFTALNAAREEAGEPLFANP
RNAAAGSLRQLDPKITASRSLSLFVYQVISLTGAEVATQAGALDFLAELGFPVNPYRVVA
PDIQAVLEEVKAWTPERRASLPYEIDGLVIKVNDLALHSVLGATAKAPRWAMAYKFPAEQ
ATARVEGIILRVGRTGVLTPTAVLTPVRLAGTTVSRATLHNEDYIREKDIRIGDTVIVQK
AGDIIPEVVAVIPERRTGSEEVFTMPERCPACGAAVVRPPGEAAHRCTGGLACPAQVLEG
IIHFASRGAMDIQGLGPAIVAQLLEAGLIHDAADLYYLKEEDLLKLERFGQQSASNLLAA
IAASKKQPLERLIFALGIRNVGQRAARVLADHFGSLDKLAAATVEELTALPDIGPRIAEN
IREFFGEPRNRAVLEKLKKAGVRLEALNAAAPAGPLTGKVFVLTGTLPGMTRQEAEELIT
RAGGKVSSSVSRKTDYVVAGEKPGSKLDRARELGVPVINADGLRQLLRQ
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggagacgcgccgctgctatcctgggaagttcagttttcaggagttggcagagagccgt
tgggtaactatttgcgtggtgggacatagcagcggctgcacaggaaatattatctccggg
ggaataggtatggatttagctgctgcccggcaacgggtggaagaattgcgacgcctgatc
gaagaacataactaccgctactacgtcctcgaccaaccctcgatcagcgaccgggaatac
gacgccctgatgcaggaactcatagccctggaggaggcttaccccgaactccggaccccg
gactcccccagccagcgggtagggggtgcaccccgggaagagttcaaccaggtgcgccat
ccccaggtactgctgagcctcaacgacgcctttaatgaaggcgacctgctggagtttgac
cgtcgcgtccgggatttggcgggccgcccggtggaatacgtcatcgaggctaaaattgac
ggcctggctgtagccctcacctacagggacggcctttttaccctgggcgccacccgggga
gacggccaggtgggagaggaggtcactgcgaatctcaaaaccattcccgccctgcccctg
cgcctgcgccggccactgccttttctcgtggtccgaggggaggtctacatgcccaaggtc
gcctttaccgccctgaatgccgcccgggaggaagccggggaacccctctttgccaacccc
cgtaacgcggccgccggttcactgcgccagctggacccgaaaataacggccagtcgcagc
ttgagcctctttgtttatcaggtaatcagccttaccggggcggaagttgccacccaggcc
ggggccctggacttcctggcggagctgggctttcccgtcaacccttaccgggtcgtggcc
ccggacattcaggccgtcctggaggaggtaaaagcctggacgccggaaaggcgggcgagt
ttaccctatgaaatcgacggcctggtcatcaaggtcaacgacctggcccttcattccgtc
ctgggggcgacggccaaagccccccgttgggctatggcctataaattcccggctgaacag
gccaccgccagggtggaggggattatcctgcgggtcgggcgcacgggggttctgaccccc
acggccgtcctcaccccggtccgcctggccggaaccaccgttagccgggccactttacat
aatgaagattatatccgggagaaggacattcgcatcggcgatacagtcattgttcagaag
gccggcgatatcatcccggaggtggtggctgttataccggagcggcgtaccgggtcggaa
gaggtctttaccatgccggagcgctgcccggcctgcggggctgcggtagtgcggccgccg
ggggaggcggcccaccgctgcaccggcggtctggcctgtccggcccaggtcctggagggg
attatccacttcgcttcccggggggccatggacatccagggcctgggtccggccatcgtg
gcccagctcctggaagccggcctcatccacgacgccgccgatctctattatttaaaggaa
gaagacctgttaaaactggagcgcttcggccagcagtcggccagcaatcttctggcagcc
attgctgccagtaaaaagcaacccctggaacgcctcatctttgccctgggtatccgtaac
gtcggtcagcgggcggcccgggtcctggccgatcatttcggttccctggataaactggcc
gcggccacggtagaggaattgaccgccctgcccgatatcggcccccgtattgccgagaat
atccgggagttttttggcgaaccccggaaccgggccgtactggaaaagcttaaaaaggcc
ggggtgcggctggaggctttgaatgcagcagccccggccggacccttaaccggcaaggtc
tttgtcctcaccggcaccttgccgggtatgacccgccaggaagcggaggaactgatcacc
agggcggggggtaaagtcagcagcagtgtgagccggaaaacagactatgtagtcgccggt
gaaaaacctggctccaagttagaccgtgcccgggaactgggagtgccggtaatcaacgcg
gatgggttgcgacaactcttgcgccagtaa
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