KEGG   Massilia oculi: DIR46_24250
Entry
DIR46_24250       CDS       T05448                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mtim  Massilia oculi
Pathway
mtim03030  DNA replication
mtim03410  Base excision repair
mtim03420  Nucleotide excision repair
mtim03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mtim00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DIR46_24250
   03410 Base excision repair
    DIR46_24250
   03420 Nucleotide excision repair
    DIR46_24250
   03430 Mismatch repair
    DIR46_24250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mtim03032]
    DIR46_24250
   03400 DNA repair and recombination proteins [BR:mtim03400]
    DIR46_24250
Enzymes [BR:mtim01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DIR46_24250
DNA replication proteins [BR:mtim03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DIR46_24250
DNA repair and recombination proteins [BR:mtim03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DIR46_24250
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DIR46_24250
   MMR (mismatch excision repair)
    DNA ligase
     DIR46_24250
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DIR46_24250
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD Nlig-Ia HHH_5 PTCB-BRCT BRCT_2 DUF6187 DUF4796_N
Other DBs
NCBI-ProteinID: AWL07230
UniProt: A0A2S2DPC3
LinkDB
Position
5403062..5405377
AA seq 771 aa
MAWLVAELNRASYNYHVLDAPTIPDAEYDKLFHELLALETAHPEAIDPDSPTRRVGDALS
PEFGQVTHAVPMLSLNNGFTDEDIDNFDRKAREGLEVRQVVYNAELKFDGLAISLRYEDG
RLVQAATRGDGYTGEDVTANIRTVRVIPMRLHGSEAPAVLEVRGEVLMFKRDFEALNERQ
RAAGQKEFANPRNAAAGSLRQLDARITNERRLRFFAYGVGQVDGADLPDTHSGLLDWFEA
LGLPVAKERKVVAGRDGLLEFYRDVGERRKSLPYEIDGVVYKVDRIEDQRALGFVSRAPR
FALAHKFPAEEALTTVQAIEVQVGRTGAITPVARLLPVSVGGVTVTNATLHNEDEVRRKD
VRVGDTVIVRRAGDVIPEVLSVVLERRLTPEPAVYALPKQCPVCGSHVVREADEAIARCS
GGLTCAAQRKEAIRHFAGRRMMDIEGLGDRYIDSLVEANLVKGVADLYKLTLDDLLKMKR
LADERDGTTPETVKQGKVATKWADNLLAAIAASRQPPLERLLFALGIRHVGESTAKTLAD
WLGSLDLVRRAPAALLRVLPDIGGTVAESIAEFFAEEKNQIALNALLEAGVGPKGEHPPK
PQLREKLDEIKLLAALDIPKLTEPRARQVVGAGQTLEEIGVRTDFGIFGLPATVAAALEE
WMAVRENRERLQALAALRRSLLESLPEASAAAAPEGPLAGKTFVLTGTLPTMSRDAAGAL
IEQAGGKVSGSVSKKTSYVVAGVDAGSKLAKAEELGVTILDEAALLALLGQ
NT seq 2316 nt   +upstreamnt  +downstreamnt
atggcatggctggtcgcggaactgaaccgcgccagctacaactaccatgtgctggacgcg
ccgacgattcccgacgccgagtacgacaagctgttccacgagctgctggcgctggaaacg
gcgcatccggaagcaatcgaccccgactcgccgacccggcgcgtgggcgacgccttgtcc
cccgagttcggccaggtcacccatgcggtgccgatgctgtcgctgaacaacggcttcacg
gacgaggacatcgataatttcgaccgcaaggcgcgcgaaggcctcgaggtacgccaggtc
gtctacaacgccgaactgaagttcgatggcctggccatcagcctgcgctacgaggatggg
cgcctggtgcaggcggccacccgcggcgacggctacacgggcgaggacgtcaccgccaat
atccgcaccgtgcgcgtgatcccgatgcggctgcacggcagcgaggcgccggccgtgctc
gaggtgcgtggcgaggtgctgatgttcaagcgcgacttcgaggccctgaacgagcgccag
cgcgccgccggccagaaggaattcgccaatccgcgcaatgccgccgccggcagcctgcgc
cagctggacgcgcgcatcaccaatgaacgccggctgcgtttcttcgcttatggcgtgggc
caggtggacggcgccgacctgccggacacgcattcgggcctgctcgactggttcgaggcg
ctcgggctgccggtggcgaaggagcgcaaggtggtcgcgggccgtgacggcctgctcgag
ttctaccgcgacgtcggcgaacgccgcaagtcgctgccctacgagatcgacggcgtggtc
tataaagtcgaccgcatcgaggaccagcgcgcgctgggcttcgtctcgcgcgcgccgcgc
ttcgcgctggcccacaaattcccggccgaggaagcgctgaccacggtccaggcgatcgag
gtgcaggtcggccgcaccggcgccatcacgccggtggcgcgcctgctgccggtctcggtc
ggcggcgtcaccgtcaccaacgccaccctgcacaacgaagacgaggtacggcgcaaggac
gtgcgcgtgggcgacaccgtgatcgtgcgccgcgccggcgacgtcatccccgaggtattg
tcggtggtgctggagcgccgcttgaccccggagccggcggtctatgcattgccgaagcaa
tgcccggtatgcggttcgcacgtggtgcgcgaagccgatgaggcgatcgcccgctgctcc
ggcggcctgacctgcgcggcccagcgcaaggaagcgatccgccacttcgccggtcgccgc
atgatggacatcgagggcctcggcgaccgttatatcgacagcctggtcgaggcgaacctg
gtcaagggtgtggccgacctgtacaagctcacgctcgatgacctgctcaagatgaagcgc
ctggccgacgagcgcgacggcaccacgcccgaaaccgttaaacagggcaaggtcgccacc
aagtgggccgacaacctgctggccgcgatcgccgccagcaggcagccgccgctcgaacgc
ctgctgttcgcgctcggcatccgtcacgtgggcgagtcgaccgccaagacgctggccgac
tggctcggcagcctggacctggtgcggcgcgcgcccgccgcgctgctgcgcgtgctgccc
gacatcggcggcacggtggccgaatcgatcgccgagttcttcgccgaagaaaagaaccag
atcgccctgaacgccttgctggaagcgggcgtggggccgaagggcgagcatccgccgaaa
ccgcagctgcgcgaaaagctcgacgagatcaagctgctggccgcgctcgacattccgaaa
ctgaccgagccgcgcgcgcgccaggtggtgggcgccggccagacgctggaagagattggc
gtgcgcaccgacttcggcatcttcggcctgccggcgacggtcgcggcggcgctcgaggaa
tggatggcggtgcgcgagaaccgggagcggctgcaggcgctggcggccctgcgccgctcg
ctgctggaatccctgcccgaagcctcggcggcggccgcgcccgaggggccgctggccggc
aagaccttcgtcctgaccggcaccttgccgaccatgagccgcgatgcggccggcgcgctg
atcgagcaggccgggggcaaggtgtcgggctcggtgtcgaagaagacttcctacgtggtg
gccggcgttgatgcgggcagcaagctggccaaggccgaggagctgggcgtcacgatcctg
gacgaggcggcgctgctggcgctgctggggcagtga

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